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SBGridTV

Supported Applications

RoseTTAFold

  • Description

    Accurate prediction of protein structures and interactions using a 3-track network

  • Usage Notes

    SBGrid/BioGrids RosettaFold uses an environment variable to specify the location of the requires databases:

    ROSETTAFOLD_DB_PATH

    If this variable is not set in the users environment before calling rosettafold it will default to:

    ROSETTAFOLD_DB_PATH=$SB_LOCAL/rosettafold
    

    which for most sites is /programs/local/rosettafold

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install rosettafold Copy to clipboard
  • Primary Citation*

    M. Baek, F. DiMaio, Anishchenko I, J. Dauparas, S. Ovchinnikov, G. R. Lee, J. Wang, Q. Cong, L. N. Kinch, R. D. Schaeffer, C. Millán, H. Park, C. Adams, C. R. Glassman, A. DeGiovanni, J. H. Pereira, A. V. Rodrigues, A. A. van Dijk, A. C. Ebrecht, D. J. Opperman, T. Sagmeister, C. Buhlheller, T. Pavkov-Keller, M. K. Rathinaswamy, U. Dalwadi, C. K. Yip, J. E. Burke, K. C. Garcia, N. V. Grishin, P. D. Adams, R. J. Read, and D. Baker. 2021. Accurate prediction of protein structures and interactions using a three-track neural network. Science (New York, N.Y.). 373(6557): 871-876.


    • *Full citation information available through

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