widely used molecular visualization package developed by Warren DeLano, now maintained by Schödinger, LLC. This installation includes official incentive builds of PyMOL.
SBGrid non-profit laboratories in North America, Europe, Asia, and Australia have full access to the official incentive builds of PyMOL.
The SBGrid Consortium PyMOL license is provided with PyMOL in the SBGrid software installation.
Pymol is installed with the APBS plugin. Your PDB must be in the following format:
- No water or ligand molecules
- B-factors < 100
- No alternative conformations
- No partial occupancies
InstallationUse the following command to install this title with the CLI client:
$ sbgrid-cli install pymol
Citation NotePlease cite PyMol as follows, editing the version number in accordance with your usage: Schrodinger, LLC. 2010. The PyMOL Molecular Graphics System, Version X.X.
Linux 64:2.5.0_openvr, 2.5.0_268, 2.4.1_198, 2.2.3, 184.108.40.206, 220.127.116.11
OS X INTEL:2.5.0_279, 2.4.1_228, 2.2.3, 18.104.22.168, 22.214.171.124, 1.3r4-x11