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SBGridTV

Supported Applications

PyMOL

  • Description

    widely used molecular visualization package developed by Warren DeLano, and now maintained by Schödinger, LLC. SBGrid non-profit laboratories have full access to the official incentive builds of PyMOL.

    The SBGrid Consortium PyMOL license credentials are contained in the NOTES file in the PyMOL installation directories in your software installation.

  • Usage Notes

    Pymol is installed with the APBS plugin. Your PDB must be in the following format:

    1. No water or ligand molecules
    2. B-factors < 100
    3. No alternative conformations
    4. No partial occupancies
  • Citation Note

    Please cite PyMol as follows, editing the version number in accordance with your usage: Schrodinger, LLC. 2010. The PyMOL Molecular Graphics System, Version X.X.

  • Webinars

    Topic: Communicating your research results using PyMOL
    Presenter: Daniel Cappel, Senior Applications Scientist, Schrödinger, Inc.

    Host: Jason Key
    Recorded on September 13, 2016

    Topic: PyMOL Demo, Hints, and New Features
    Presenter: Thomas Holder, PyMOL Developer, Schrodinger

    Recorded on March 7, 2013

  • Categories

    Structure Visualization & Analysis

  • Default Versions

    Linux 64:  1.8.6.0
    OS X INTEL:  1.8.6.0

  • Other Available Versions

      Linux 32:

      1.7.2.1, 1.6.0.0, 1.5.0.5, 1.5.0.4, 1.3
    • Linux 64:

      1.8.6.0_svn, 1.8.4.0, 1.8.2.1, 1.7.6.6
    • OS X INTEL:

      1.8.4.0, 1.8.2.3, 1.7.6.6
    • powermac:

      1.2r2, 1.2b0
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