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Supported Applications

Probe

  • Description

    an application to evaluate atomic packing, either within or between molecules. It generates “contact dots” where atoms are in close contact. Probe reads atomic coordinates from protein databank (PDB) format files and writes dot-lists for inclusion in a kinemage file.

  • Usage

    To list all executables provided by Probe, run: $ sbgrid-list probe Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install probe Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    V. B. Chen, W. B. Arendall, J. J. Headd, D. A. Keedy, R. M. Immormino, G. J. Kapral, L. W. Murray, J. S. Richardson, and D. C. Richardson. 2010. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallographica Section D: Biological Crystallography. 66(1): 12-21.


    • *Full citation information available through

  • Keywords

    Analysis, Visualization

  • Default Versions

    Linux 64:  2.18.211005 (304.0 KB)
    OS X INTEL:  2.18.211005 (328.3 KB)

  • Other Versions

      Linux 64:

      2.13.110830 (1.0 MB) , 2.16.130520 (305.7 KB)

    • OS X INTEL:

      2.12.071128 (513.1 KB) , 2.13.110830 (514.0 KB) , 2.16.130520 (634.5 KB)

  • Developers

    David Richardson, Jane Richardson

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