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Supported Applications

OpenNucleome

  • Description

    an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting.

  • Usage

    To list all executables provided by OpenNucleome, run: $ sbgrid-list opennucleome Copy to clipboard

  • Usage Notes

    SBGrid curated OpenNucleome provides two callable programs: python.opennucleome, jupyter.opennucleome Please see the example here: https://sbgrid.org/wiki/examples/opennucleome

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install opennucleome Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Z. Lao, K. D. Kamat, Z. Jiang, and B. Zhang. 2024. OpenNucleome for high-resolution nuclear structural and dynamical modeling. eLife. 13.


    • *Full citation information available through

  • Keywords

    Computational Chemistry

  • Default Versions

    Linux 64:  1.3.0 (6.2 GB)

  • Developers

    Zhongling Jiang, Bin Zhang, Zhuohan Lao, Kartik Kamat

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