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OpenNucleome

  • Description

    OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting.

  • Usage

    To list all executables provided by OpenNucleome, run: $ sbgrid-list opennucleome Copy to clipboard

  • Usage Notes

    SBGrid curated OpenNucleome provides two callable programs:

    python.opennucleome

    jupyter.opennucleome

    Please see the example here: https://sbgrid.org/wiki/examples/opennucleome

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install opennucleome Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Z. Lao, K. D. Kamat, Z. Jiang, and B. Zhang. 2024. OpenNucleome for high-resolution nuclear structural and dynamical modeling. eLife. 13.


    • *Full citation information available through

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