Supported Applications
OpenFold3
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Description
is a biomolecular structure prediction model aiming to be a bitwise reproduction of DeepMind's AlphaFold3, developed by the AlQuraishi Lab at Columbia University and the OpenFold consortium. It supports structure prediction of standard and non-canonical protein, RNA, and DNA chains, and small molecules, with pipelines for generating MSAs using ColabFold server or JackHMMER/hhblits following the AlphaFold3 protocol. The tool includes kernel acceleration through cuEquivariance and DeepSpeed4Science kernels, multi-query job support with distributed predictions across multiple GPUs, and performs competitively with state-of-the-art open source biomolecular structure prediction models.
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Usage
To list all executables provided by OpenFold3, run:$ sbgrid-list openfold3 -
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install openfold3Available operating systems: Linux 64
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Keywords
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Default Versions
Linux 64: 0.3.1 (8.5 GB)