Supported Applications

MODELLER

Description

a tool used for homology or comparative modeling of protein three-dimensional structures.
Usage
To list all executables provided by MODELLER, run: $ sbgrid-list modeller
Usage Notes

MODELLER is run from the command line using typically using the sbgrid-provided python for modeller. Typical usage is python.modeller my_modller_pythonscript.py. There are some tutorials to get you started available at http://salilab.org/modeller/tutorial/.

A graphical interface to MODELLER is commercially available from Accelrys, as part of Discovery Studio Modeling 1.1.
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install modeller Available operating systems: Linux 64, OS X INTEL
Primary Citation*

B. Webb and A. Sali. 2016. Comparative Protein Structure Modeling Using MODELLER. Current protocols in bioinformatics. 54: 5.6.1-5.6.37.
- *Full citation information available through

Keywords

Computational Chemistry, Multiple Structure Alignment, Protein Structure Analysis, Proteomics
Default Versions

Linux 64: 10.7 (285.7 MB)
OS X INTEL: 10.7 (259.0 MB)
Other Versions
- OS X INTEL:
  10.3 (308.7 MB) , 10.4 (778.3 MB) , 10.5 (307.5 MB) , 9.24 (410.4 MB)
Developers

Andrej Sali, Ben Webb