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IsoNet2

  • Description

    a deep-learning software package for simultaneous missing wedge correction, denoising, and CTF correction in cryo-electron tomography reconstructions using a deep neural network trained on information from the original tomogram(s).

  • Usage

    To list all executables provided by IsoNet2, run: $ sbgrid-list isonet2 Copy to clipboard

  • Usage Notes

    To use the Isonet CLI (command line), the command is: isonet.py. As this is the same command as in v0.3, to use Isonet v2 from CLI, check the version in use with: isonet.py --sbwhich If it is not the desired one, use this command to change it: echo isonet2 > ~/.sbgrid_capsule/isonet.py check: isonet.py --sbwhich more details in: https://docs.sbgrid.org/environment/capsules/?h=duplicate#sbgrid-useful-commands

    Command to launch the Isonet2 GUI: IsoNet2

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install isonet2 Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Liu, Yun-Tao, Fan, Hongcheng, Jih, Jonathan, Tran, Liam, Zhang, Xiaoying, Zhou, and Z. Hong. 2025. IsoNet2 determines cellular structures at submolecular resolution without averaging. bioRxiv. Cold Spring Harbor Laboratory.


    • *Full citation information available through

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