Supported Applications

IGV

Description

(Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
Usage Notes

https://github.com/broadinstitute/IGV/issues
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install igv Available operating systems: Linux 64, OS X INTEL
Primary Citation*

J. T. Robinson, H. Thorvaldsdóttir, W. Winckler, M. Guttman, E. S. Lander, G. Getz, and J. P. Mesirov. 2011. Integrative genomics viewer. Nature Biotechnology. 29: 24-26.
- *Full citation information available through
Citation Note

James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov. igv.js: an embeddable JavaScript
implementation of the Integrative Genomics Viewer (IGV), Bioinformatics, 39(1) (2023), btac830

Keywords

ChIP-Sequencing, DNA-Sequencing, Genome Annotation, Genome Visualization, Genomics, Visualization
Default Versions

Linux 64: 2.16.0 (153.3 MB)
OS X INTEL: 2.16.0 (156.9 MB)
Other Versions
- OS X INTEL:
  2.11.9 (177.9 MB)
Developers

Helga Thorvaldsdottir, Jacob Silterra, Jill Mesirov, Jim Robinson