Supported Applications

HHsuite

Description

an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install hhsuite Available operating systems: Linux 64, OS X INTEL
Primary Citation*

M. Remmert, A. Biegert, A. Hauser, and J. Söding. 2012. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods. 9: 173-175.
- *Full citation information available through
Citation Note

Please cite the following url: https://github.com/soedinglab/hh-suite

Keywords

High-throughput sequencing, Protein-protein sequence alignment, Proteomics
Default Versions

Linux 64: 3.0.3 (53.9 MB)
OS X INTEL: 3.0.3 (28.6 MB)
Other Versions
- OS X INTEL:
  3.0.0 (27.4 MB)
Developers

Johannes Soeding, Martin Steinegger