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Supported Applications

Foldseek

  • Description

    a program that enables fast and sensitive comparisons of large structure sets.

  • Usage

    To list all executables provided by Foldseek, run: $ sbgrid-list foldseek Copy to clipboard

  • Usage Notes

    foldseek for Linux/Unix provides the following instruction set specific executables. The default, foldseek, is SSE2.

    foldseek

    foldseek.arm64

    foldseek.avx2

    foldseek.sse2

    foldseek.sse41

    foldseek.ppc64le-POWER8

    foldseek.ppc64le-POWER9

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install foldseek Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. van Kempen, S. S. Kim, C. Tumescheit, M. Mirdita, J. Söding, and M. Steinegger. 2022. Foldseek: fast and accurate protein structure search. bioRxiv, doi:10.1101/2022.02.07.479398.


    • *Full citation information available through

  • Webinars

    Foldseek

    Topic: Fast and accurate protein structure search with Foldseek
    Presenter: Prof. Martin Steinegger, Asst Professor of Bioinformatics, Seoul National University

    Host: Pete Meyer
    Recorded on Feb 14, 2023

    For more information on Foldseek: https://github.com/steineggerlab/foldseek

  • Keywords

    Structural Biology, Structure Visualization & Analysis, Visualization

  • Default Versions

    Linux 64:  8-ef4e960 (308.2 MB)
    OS X INTEL:  8-ef4e960 (52.9 MB)

  • Other Versions

      Linux 64:

      1.3c64211 (83.8 MB) , 5-53465f0 (337.4 MB)

    • OS X INTEL:

      1.3c64211 (39.8 MB) , 5-53465f0 (46.2 MB)

  • Developers

    Martin Steinegger, Johannes Soeding, Charlotte Tumescheit, Milot Mirdita, Stephanie Kim, Michel van Kempen

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