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Supported Applications

DeepETPicker

  • Description

    a deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms.

  • Usage

    To list all executables provided by DeepETPicker, run: $ sbgrid-list deepetpicker Copy to clipboard
  • Usage Notes

    Available scripts can be run with: - deepetpicker.main.py
    - deepetpicker.preprocess.py
    - deepetpicker.test_bash.py
    - deepetpicker.generate_train_config.py
    - deepetpicker.train_bash.py

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install deepetpicker Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    G. Liu, T. Niu, M. Qiu, Y. Zhu, and F. S. &. G. Yang. 2024. DeepETPicker: Fast and accurate 3D particle picking for cryo-electron tomography using weakly supervised deep learning. Nature Communications. 15(2090).


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  20240103 (4.0 GB)

  • Developers

    Fei Sun, Guole Liu, Ge Yang

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