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Cryosamba

  • Description

    a deep learning based tool for denoising cryo-ET datasets. It is designed to accept .mrc, .rc and .tif single 3D files, or can accept a sequence of 2D.tf files if a path is provided.

  • Usage

    To list all executables provided by Cryosamba, run: $ sbgrid-list cryosamba Copy to clipboard

  • Usage Notes

    Requires Cuda 11 or greater.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install cryosamba Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    J. I. Costa-Filho, L. Theveny, M. de Sautu, and T. Kirchhausen. 2024. CryoSamba: self-supervised deep volumetric denoising for cryo-electron tomography data.


    • *Full citation information available through

  • Keywords

    Analysis, Visualization

  • Default Versions

    Linux 64:  1.0 (6.1 GB)

  • Developers

    Liam Theveny, Tomas Kirchhausen, Marilina Desautu, Jose Inacio

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