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CryoFold

  • Description

    a graphical user interface for the CryoFold method, which integrates several computational techniques (MAINMAST, Targeted Molecular Dynamics, MDFF/ReMDFF, and MELD) to determine protein structures and conformational ensembles from cryo-EM density maps.

  • Usage

    To list all executables provided by CryoFold, run: $ sbgrid-list cryofold Copy to clipboard

  • Usage Notes

    Run with cryofold

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install cryofold Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Shekhar, G. Terashi, C. Gupta, D. Sarkar, G. Debussche, N. J. Sisco, J. Nguyen, A. Mondal, J. Zook, J. Vant, P. Fromme, W. D. V. Horn, E. Tajkhorshid, D. Kihara, K. Dill, A. Perez, and A. Singharoy. 2020. CryoFold: determining protein structures and ensembles from cryo-EM data. bioRxiv Preprint Server.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  20250325 (1.1 GB)
    OS X INTEL:  20250325 (1.1 GB)

  • Developers

    Alberto Perez, Daisuke Kihara, Ken Dill, Abhishek Singharoy

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