Supported Applications
ColabDesign
-
Description
a tool that makes protein design accessible though Jupyter notebooks using AlphaFold, TrRosetta etc.
-
Usage
To list all executables provided by ColabDesign, run:$ sbgrid-list colabdesign
-
Usage Notes
Example Jupyter notebooks can be found by following the links at https://github.com/sokrypton/ColabDesign/blob/main/README.md e.g. AFDesign example notebook can be found at https://github.com/sokrypton/ColabDesign/tree/main/af/design.ipynb
-
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install colabdesign
Available operating systems: Linux 64
-
Keywords
Protein-Protein Interaction Prediction, Protein Structure Analysis
-
Default Versions
Linux 64:  1.1.1 (6.1 GB)
-
Developers
Sergey Ovchinnikov, Christopher Frank, Shihao Feng, Justas Dauparas, Weikun Wu