Supported Applications

ColabDesign

Description

a tool that makes protein design accessible through Jupyter notebooks by using advanced protein structure prediction models like AlphaFold and TrRosetta for designing novel proteins with targeted structures.
Usage
To list all executables provided by ColabDesign, run: $ sbgrid-list colabdesign
Usage Notes

Example Jupyter notebooks can be found by following the links at https://github.com/sokrypton/ColabDesign/blob/main/README.md e.g. AFDesign example notebook can be found at https://github.com/sokrypton/ColabDesign/tree/main/af/design.ipynb
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install colabdesign Available operating systems: Linux 64

Keywords

Protein-Protein Interaction Prediction, Protein Structure Analysis
Default Versions

Linux 64: 1.1.2 (9.5 GB)
Other Versions
Developers

Sergey Ovchinnikov, Christopher Frank, Shihao Feng, Justas Dauparas, Weikun Wu