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breseq

  • Description

    a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.

  • Usage

    To list all executables provided by breseq, run: $ sbgrid-list breseq Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install breseq Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.


    • *Full citation information available through

  • Keywords

    High-throughput sequencing, WGS Analysis

  • Default Versions

    Linux 64:  0.38.3 (2.6 GB)
    OS X INTEL:  0.38.3 (2.4 GB)

  • Other Versions

      Linux 64:

      0.27.1 (39.6 MB) , 0.29.0 (58.1 MB) , 0.30.0 (35.1 MB) , 0.32.0 (38.2 MB) , 1.00rc8 (62.7 MB)

    • OS X INTEL:

      0.27.1 (53.6 MB) , 0.30.0 (47.1 MB) , 0.32.0 (40.7 MB) , 1.00rc8 (57.9 MB)

  • Developers

    Daniel Deatherage, Dave Knoester, Jeffrey Barrick

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