Supported Applications
breseq
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Description
a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install breseq
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  0.32.0 (38.2 MB)
OS X INTEL:  0.32.0 (40.7 MB) -
Other Versions
Linux 64:
0.27.1 (39.6 MB) , 0.29.0 (41.9 MB) , 0.30.0 (35.1 MB) , 1.00rc8 (61.8 MB) -
OS X INTEL:
0.27.1 (53.6 MB) , 0.30.0 (47.1 MB) , 1.00rc8 (55.1 MB)
Developers
Daniel Deatherage, Dave Knoester, Jeffrey Barrick