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AlphaJudge

  • Description

    is a Python pipeline for evaluating AlphaFold2 and AlphaFold3 protein complex predictions by combining model confidence metrics such as ipTM, pTM, pLDDT, and PAE with interface-level biophysical descriptors including contacts, hydrogen bonds, salt bridges, buried area, solvation proxy, and shape complementarity.

  • Usage

    To list all executables provided by AlphaJudge, run: $ sbgrid-list alphajudge Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install alphajudge Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the following URL: https://github.com/KosinskiLab/AlphaJudge

  • Keywords

    Computational Chemistry

  • Default Versions

    Linux 64:  0.3.0 (1.1 GB)
    OS X INTEL:  0.3.0 (903.0 MB)

  • Developers

    Dima Molodenskiy, Jan Kosinski

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