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AlphaJudge

  • Description

    is a Python pipeline for evaluating AlphaFold2 and AlphaFold3 protein complex predictions by combining model confidence metrics such as ipTM, pTM, pLDDT, and PAE with interface-level biophysical descriptors including contacts, hydrogen bonds, salt bridges, buried area, solvation proxy, and shape complementarity. It auto-detects AF2 versus AF3 run layouts, computes per-model and per-interface scores such as pDockQ, pDockQ2, mpDockQ, ipSAE, and LIS, and writes standardized CSV summaries and PAE heatmaps for downstream ranking, validation, and machine-learning workflows.

  • Usage

    To list all executables provided by AlphaJudge, run: $ sbgrid-list alphajudge Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install alphajudge Copy to clipboard Available operating systems: Linux 64, OS X INTEL
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