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af_analysis

  • Description

    is a Python package for analysis of AlphaFold protein structure predictions from AlphaFold 2/3, ColabFold, AlphaFold-Multimer, AlphaPulldown, Boltz1, Chai-1, and MassiveFold. It imports prediction outputs into pandas DataFrames, computes structural quality metrics including pDockQ, pDockQ2, LIS, ipSAE, and ipTM-derived measures, and supports visualization, clustering, and model ranking to compare predicted conformations and select high-quality models.

  • Usage

    To list all executables provided by af_analysis, run: $ sbgrid-list af_analysis Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install af_analysis Copy to clipboard Available operating systems: Linux 64, OS X INTEL
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