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OCTOPI

  • Description

    is a deep-learning framework for automated 3D particle picking in cryo-electron tomography, with tools for training and running 3D U-Net models and automatically exploring model configurations.

  • Usage

    To list all executables provided by OCTOPI, run: $ sbgrid-list octopi Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install octopi Copy to clipboard Available operating systems: Linux 64

  • Citation Note

    Please cite the following URL: https://github.com/Biohub/octopi

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  1.7.0 (13.0 GB)

  • Other Versions

      Linux 64:

      1.6.0 (11.5 GB)

  • Developers

    Jonathan Schwartz, Utz H Ermel

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