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deepTools

  • Description

    a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.

  • Usage

    To list all executables provided by deepTools, run: $ sbgrid-list deeptools Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install deeptools Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    F. Ramírez, D. P. Ryan, B. Grüning, V. Bhardwaj, F. Kilpert, A. S. Richter, S. Heyne, F. Dündar, and T. Manke. 2016. deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Research. 44(1): W160-W165.
    (Note: Web Server issue)


    • *Full citation information available through

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  3.5.5 (540.4 MB)
    OS X INTEL:  3.5.5 (511.8 MB)

  • Other Versions

      Linux 64:

      3.3.1 (1.1 GB) , 3.5.1 (490.1 MB) , 3.5.2 (457.7 MB) , 3.5.3 (461.8 MB) , 3.5.4 (461.8 MB)

    • OS X INTEL:

      3.3.1 (438.9 MB) , 3.5.1 (444.3 MB) , 3.5.2 (435.1 MB) , 3.5.3 (439.0 MB) , 3.5.4 (439.3 MB)

  • Developers

    Thomas Manke, Devon Ryan, Fidel Ramírez

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