Join us for our weekly webinar series --- Tuesdays at 12pm ET hear from developers and scientists about what's new in structural biology. Community members can connect via Zoom and directly ask questions of presenters. Be sure to subscribe to SBGridTV to receive alerts when we post new recordings and view our full collection of past tutorials. Events are also posted on SBGrid's public calendar. To subscribe visit https://sbgrid.org/calendar/.
Up next: MoRDa
Sept 14th at 12pm ET
Science and Technology Facilities Council
Webinar connection instructions: We are now using Zoom to connect for webinars. Connection instructions:
- Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/6170001111
Password: cryoem - Call in number: +1 408 638 0968 (US Toll) - Meeting ID: 617 000 1111; or iPhone one-tap (US Toll): +14086380968,,6170001111# or +16465588656,,6170001111#
Telephone password: 851323 - Or look up an international access number
WEBINAR LINEUP
UPCOMING
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| July & August | We're taking a break for the summer. See you in September! |
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| Tuesday, September 14 | Andrey Lebedev, Ph.D., Science and Technology Facilities Council |
PAST WEBINARS
2020-2021
| Tuesday, September 15 | Prof. Daniel Minor, University of California, San Francisco K2P channel gating caught in the act: asymmetric pinching and dilation of a potassium channel selectivity filter |
| Tuesday, September 22 | Daniel Wrapp, Graduate student, Jason McLellan's lab The University of Texas at Austin Structural insights into SARS-CoV-2 S and implications for therapeutic development |
| Tuesday, September 29 | Prof. Qing Fan, Columbia University Cryo-EM structure of human GABAB receptor |
| Tuesday, October 6 | Lance Westerhoff, Ph.D., QuantumBio, Inc. MovableType Software for Fast Free Energy-based Virtual Screening |
| Tuesday, October 13 | From Priyamvada Acharya's group at Duke Human Vaccine Institute Sophie Gobeil, Ph.D. Structural, biophysical, and biochemical studies of SARS-CoV-2 spike variants |
| Kartik Manne, Ph.D. Structural studies on HIV-1 Env for vaccine design | |
| Tuesday, October 20 | Jose Miguel de la Rosa Trevin, Ph.D., Research Engineer, Science for Life Laboratory, Stockholm University Scipion 3.0 |
| Tuesday, October 27 | Markus Stabrin, Max Planck Institute of Molecular Physiology TranSPHIRE |
| Tuesday, November 3 | Vicky Higman, Ph.D., Research Fellow, University of Leicester CcpNmr Analysis Version 3: Assign & Screen |
| Tuesday, November 10 | POSTPONED - Yilai Li, Ph.D., Research Fellow, University of Michigan CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks |
| Tuesday, November 17 | Radhika Malik, Ph.D., Assistant Professor, Icahn School of Medicine at Mt. Sinai Cryo-EM Structures of DNA Polymerase Zeta in Translesion DNA Synthesis |
| Rinku Jain, Ph.D., Assistant Professor, Icahn School of Medicine at Mt. Sinai Cryo-EM Structure and Dynamics of DNA Polymerase Delta in High-Fidelity DNA Synthesis | |
| Tuesday, December 1 | Vera Moiseenkova-Bell, Ph.D., University of Pennsylvania Perelman School of Medicine Structural insights into TRP channels gating |
| Tuesday, December 8 | Matt Jaremko, Ph.D., Leemor Joshua-Tor's group, Cold Spring Harbor Laboratory Twist and Pinch, Rock and Roll: Uncovering the dynamic states of the human Origin Recognition Complex |
| Tuesday, December 15 | Prof. Lejla Zubcevic, University of Kansas Medical Center The role of the cytoplasmic inter-protomer interface in thermoTRPV channel gating |
| Tuesday, January 19 | Benjamin Himes, Ph.D., University of Massachusetts Medical School Multi-scale classification of the floppy bits; using biological priors in emClarity |
| Tuesday, January 26 | Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council DeepEMhancer: exploiting previous knowledge to enhance map visualization |
| Tuesday, February 2 | Fabian Schoenfeld, Ph.D., Max Planck Instiutute of Molecular Physiology Computing 2D class averages on a single machine using GPU ISAC |
| Tuesday, February 9 | Jason Key, Ph.D., SBGrid, Harvard Medical School SBGrid Installation Tools Carol Herre, M.Sc., SBGrid, Harvard Medical School SBGrid Capsule Environment |
| Tuesday, February 16 | Paul Emsley, Ph.D., MRC Laboratory of Molecular Biology Coot |
| Tuesday, February 23 | Yilai Li, Ph.D., University of Michigan CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks |
| Tuesday, March 2 | Prof. Willy Wriggers, Old Dominion University, Integrative Structural Biology with SITUS |
| Tuesday, March 9 | Florent Delhommel, Ph.D., Michael Sattler's group, Technical University of Munich, Structural characterization of a new co-chaperone involved in client-transfer between heat shock proteins |
| Tuesday, March 16 | Prof. Marcos Sotomayor, Ohio State University The Molecular Machinery of Hearing |
| Tuesday, March 23 | Woody Sherman, Ph.D., Silicon Therapeutics Physics-Driven Discovery of SNX281, a Novel Small Molecule Sting Agonist in Clinical Trials for Solid Tumors or Lymphoma |
| Tuesday, March 30 | Prof. Daniela Fera, Swarthmore College Uncovering an Allosteric Site Critical for the Interaction between B-Raf and MEK Kinases and Downstream MAPK Signaling |
| Tuesday, April 6 | Steve Meisburger, Ph.D., Nozomi Ando's group, Cornell University Deconvolving protein dynamics in solution and crystals with X-ray scattering |
| Tuesday, April 13 | Jason Key, Ph.D., SBGrid, Harvard Medical School New SBGrid GUI-based software installation manager |
| Tuesday, April 20 | Dr. Dhirendra Simanshu, NCI RAS Initiative, Frederick National Laboratory for Cancer Research Structural and mechanistic insights into the RAS biology |
| Tuesday, April 27 | Prof. Evris Gavathiotis, Albert Einstein College of Medicine Conformations, dynamics and allostery in targeting pro-apoptotic BAX |
| Tuesday, May 4 | Prof. Yoel Shkolnisky, and Amitay Eldar, Ph.D., Tel Aviv University KLT picker |
| Tuesday, May 11 | Steven Ludtke, Baylor College of Medicine EMAN2 |
| Tuesday, May 18 | Brian Jimenez-Garcia, Ph.D., University Utrecht, and Jorge Roel, Ph.D., Department of Structural Biology, Protein Design and Modeling group, IBMB-CSIC, Barcelona LightDock: Shedding light into the dark fraction of the protein interactome |
| Tuesday, June 8 | Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel Dynamo |
| Tuesday, June 29 | Prof. Alexandre Bonvin, University Utrecht HADDOCK |
2019-2020
| Tuesday, March 24 | Dr. James Vincent, SBGrid / Harvard Medical School Using the SBGrid Software Client for Remote Work | |
| Friday, March 27 | Dr. Pete Meyer, SBGrid / Harvard Medical School Remote work and structural biology computing | |
| Tuesday, March 31 | Dr. Tom Terwilliger, Los Alamos National Laboratory Density modification and model building with cryo-EM maps | |
| Friday, April 3 | Dr. Pavel Afonine, Berkeley Lab Atomic model refinement and validation in Phenix | |
| Tuesday, April 7 | Dr. Dorothee Liebschner, Berkeley Lab Map Sharpening; Model Building; other cryo-EM tools in Phenix | |
| Friday, April 9 | No webinar today -- we'll be back on Tuesday | |
| Tuesday, April 14 | Dr. Pavel Afonine, Berkeley Lab Atomic model, map and model-to-map fit validation | |
| Friday, April 17 | Prof. Daniel Panne, University of Leicester Structural insights into genome folding by CTCF and cohesin | |
| Tuesday, April 21 | Dr. Pablo Conesa, National Center for Biotechnology Quo Vadis Scipion | |
| Friday, April 24 | Dr. Tristan Croll, Cambridge Institute for Medical Research ISOLDE | |
| Tuesday, April 28 | Dr. Shawn Zheng, University of California, San Francisco The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF | |
| Friday, May 1 | Trainee Presentations (10 min each with Q&A) Goran Bajic, PhD, Stephen Harrison's group, Harvard Medical School - Structure-guided influenza virus antigen engineering focuses immune responses Ryan Feathers, Chris Fromme's group, Cornell University - Structural analysis of regulated Ypt6 (Rab6) activation by the Ric1/Rgp1 complex | |
| Tuesday, May 5 | Dr. Kay Diederichs, Universität Konstanz Crystallographic data processing with XDS, using XDSGUI | |
| Friday, May 8 | SBGrid Technology Tutorial Carol Herre, Software Release Engineer, SBGrid/Harvard Medical School - Introduction to SBGrid Capsules Dr. Jason Key, Assoc Director of Technology & Innovation, SBGrid/Harvard Medical School - Sneak Peek: SBGrid Installer v2 | |
| Tuesday, May 12 | Kelly Brock, PhD and Thomas Hopf, PhD, Laboratory of Debora Marks, Harvard Medical School EVCouplings | |
| Friday, May 15 | Ellen Zhong, Bonnie Berger's Lab, MIT CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM | |
| Tuesday, May 19 | Trainee Presentations (10 min each with Q&A) Mayukh Chakrabarti, Sandra Gabelli's group, Johns Hopkins University - Dynamic Allostery in PI3Kɑ activation: A computational approach Liron David, PhD, Hao Wu's group, Boston Children's Hospital - Assembly Mechanism of the CBM signalosome Mike Fenwick, PhD, Steve Ealick's group, Cornell University - Structural basis of substrate selectivity of viperin, an antiviral radical SAM enzyme | |
| Friday, May 22 | Dr. Colin Palmer, Science and Technology Facilities Council CCP-EM: software for cryo-EM | |
| Tuesday, May 26 | Prof. Karin Reinisch, Yale School of Medicine Structural insights into interorganelle lipid transport | |
| Friday, May 29 | Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology crYOLO and its utilization in feedback guided real-time processing | |
| Tuesday, June 2 | Dari Kimanius, Ph.D., MRC Laboratory of Molecular Biology RELION: Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination | |
| Tuesday, June 9 | Prof. Steve Reichow, Portland State University Connexin-46/50 gap junction channels in a dynamic lipid environment resolved by CryoEM at 1.9 Å | |
| Tuesday, June 16 | Prof. Chris Hill, University of Utah School of Medicine Structural insights to the mechanism of AAA unfoldases | |
| Tuesday, June 23 | Trainee Presentations (10 min each with Q&A) Michael Robertson, PhD, Georgios Skiniotis's group, Stanford University - GemSpot: A Pipeline for Robust Modeling of Ligands into CryoEM Maps Md. Mahfuzur Rahman, PhD, Ryan Hibbs's group, UT Southwestern - Cryo-EM structure of native muscle-type nicotinic acetylcholine receptor and inhibition by snake venom toxins | |
| Tuesday, June 30 | Evan Worden, Cynthia Wolberger's Laboratory, Johns Hopkins University School of Medicine Mechanisms of crosstalk between histone ubiquitination and methylation | |
| Tuesday, July 7 | Tom Goddard, University of California, San Francisco, Resource for Biocomputing, Visualization, and Informatics Making Augmented Reality Videos with ChimeraX | |
| Tuesday, July 14 | Lightning Talks (15 min each with Q&A) Makaia Papasergi-Scott, PhD, Georgios Skiniotis's group, Stanford University - Structures of metabotropic GABAB receptors Q&A with SBGrid Technical Team: | |
| Tuesday, July 21 | Prof. Brent Nannenga, Arizona State University MicroED methodology and application | |
| Tuesday, July 28 | Michael Sheedlo, PhD, Vanderbilt University, Borden Lacy's group Structural Characterization of Bacterial Translocases |