We will be performing a software update starting at approximately 5 pm Friday, Feb 17, 2006. As a reminder, should you encounter problems with the software distribution (or environment setup) the best way to get assistance is to use the online bug reporter at: http://www.sbgrid.org/bugs . The online reporter will prompt you for all necessary information required to begin troubleshooting your particular problem.
We would like to welcome the following labs as our new members:
***Washington Universtiy Biochemistry and Molecular Biophysics: Tom Ellenberger Dept of Pathology and Immunology: Daved Fremont
***University of Washington Dept of Biochemistry Tamir Gonen:
***St. Jude Children's Research Hospital and HHMI Departments of Structural Biology and Genetics and Tumor Cell Biology Brenda Schulman
***The Center for Hemostasis and Thrombosis Research, Harvard Medical School:
Bruce Furie
Barbara Furie
The following new installs, updates and fixes will be pushed this Friday, Feb 17, 2006 to all member machines:
AFFECTED APPLICATIONS:
1) XDS Nov-2005 - Linux, OS X, SGI
UPDATE TYPE: UPDATE
NOTES: Update to latest version.
USER ACTION REQUIRED: NONE
2) O 10.0.3 - OS X, Linux
UPDATE TYPE: UPDATE
NOTES: Update to O. This version now includes support for Stereo and Dials on OS X and Linux. Both versions use the dials driver developed by SBGrid and provided to Alwyn Jones for inclusion in O.
USER ACTION REQUIRED: To preserve the previous version of O set the following variable in your .versions file:
setenv O_L 10.0.1
setenv O_M 10.0.1
3) POVRAY 3.6 - Linux, OS X
UPDATE TYPE: NEW INSTALL
NOTES: Povray v3.6 is now installed.
USER ACTION REQUIRED: NONE
4) IMAGIC 060130 - Linux
UPDATE TYPE: UPDATE
NOTES: For sites with Imagic licenses, Imagic version 060130 is now the default.
USER ACTION REQUIRED: NONE
5) CCP4MG 0.12.1 - Linux
UPDATE TYPE: NEW INSTALL
NOTES: CCP4MG for Linux is now installed. The OS X version is already available. You can access ccp4mg by typing ccp4mg at the command prompt. X11 is required.
USER ACTION REQUIRED: NONE
6) MOSFLM 6.5.2 - Linux, OS X, SGI
UPDATE TYPE: UPDATE
NOTES: Mosflm 6.2.5 has been installed
USER ACTION REQUIRED: NONE
7) IMOD 3.7.3 - Linux, OS X
UPDATE TYPE: UPDATE
NOTES: IMOD has been updated to version 3.7.3 for OS X and Linux (32-bit and 64-bit)
USER ACTION REQUIRED: NONE
8) CNS 1.1 - OS X
UPDATE TYPE: FIX
NOTES: The optimized version of CNS (CNS MP) will be updated to include several performance improvements and bug fixes (namely water_pick.inp and few other minor changes).
USER ACTION REQUIRED: NONE
9) PYMOL 0.99 - Linux, OS X, SGI
UPDATE TYPE: UPDATE
NOTES: The latest pymol will be installed. On OS X this fixes the bug that didn't allow Pymol to be started over NFS mounts properly. You will no longer need to create a local copy of the program on your system.
USER ACTION REQUIRED: To preserve the old version of Pymol set the following variable in your .versions file:
setenv PYMOL_L 0.98
setenv PYMOL_S 0.97
setenv PYMOL_M 0.98
For software related help, please visit http://sbgrid.org/bugs