Monday, January 9th at 4:00pm. Join us for a 30-minute Webinar on HKL2000, presented by Wladek Minor, Professor of Molecular Physiology and Biological Physics at University of Virginia Health System.
HKL2000
Software information available on the HKL website.
Literature:
W.Minor, D.Tomchick and Z.Otwinowski. Strategies for Macromolecular Synchrotron Crystallography. Structure 2000, 8:R105-R110.
Z.Otwinowski and W.Minor. Denzo and Scalepack. International Tables for Crystallography, Volume F
Z. Otwinowski and W. Minor. Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods in Enzymology, Volume 276: Macromolecular Crystallography, part A, p.307-326, 1997,C.W. Carter, Jr. R.M. Sweet, Eds., Academic Press.
W. Minor and Z. Otwinowsk. Advances in Accuracy and Automation of Data Collection and Processing. Proceedings of IUCr Computing School, Bellingham, 1996
Webinar …
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SBGrid now supports over 200 structural biology labs around the world. Your feedback and word of mouth are essential to our success. Thank you to all of our affiliates for helping the consortium grow and improve.
Our newest members include Gaya Amarasinghe, Washington University St. Louis; Josefph Ho, Academica Sinica; Mishtu Dey, Ernie Fuentes, Lokesh Gakhar, Rob Piper, Miles Pufall, and Madeline Shea, all from University of Iowa; George Phillips, Rice University; Craig Bingman, University of Wisconsin-Madison; Oliver Ernst, University of Toronto; Evripidis Gavathiotis, Albert Einstein College of Medicine; Nicholas Reiter, Vanderbilt University; and Ulf Skoglund and Fadel Samatey, Okinawa Institute of Science and Technology;
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Monday, December 12th at 4:00pm. Join us for a 30-minute Webinar to hear Jeff Headd, postdoctoral fellow at Lawrence Berkeley National Labs, present on Phenix: Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution.
Phenix: Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung L-W, Kapral GJ, Gross-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH: PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Cryst. 2010, D66:213-221.
Software information available on the Phenix website, at the LBNL Computational Crystallography Initiative page, and the MolProbity website (model validation).
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Monday, December 12th at 4:00pm. Join the Webinar to hear Jeff Headd, postdoctoral fellow at Lawrence Berkeley National Labs, present on Phenix: Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution.
Phenix: Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung L-W, Kapral GJ, Gross-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH: PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Cryst. 2010, D66:213-221.
Software information available on the Phenix website, at the LBNL Computational Crystallography Initiative page, and the MolProbity website (model validation).
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Friday, November 11th at 3:00pm. Kevin Keating, postdoctoral fellow in the Pyle Lab at Yale University, will speak about the RCrane Coot plugin - lego-auto command for RNA. WebEx Webinar or Seminar SGM106
RCrane: Semi-automated RNA model building within Coot
RNA crystallography frequently results in electron density maps that are imprecise and difficult to interpret. RCrane is a Coot plugin that aids in RNA model building into maps of low and intermediate resolution. This plugin helps the crystallographer in placing base and phosphate atoms, and the plugin then builds the remainder of the backbone automatically and accurately.
Keating KS, Pyle AM. Semiautomated model building for RNA crystallography using a directed rotameric approach. Proc. Natl. Acad. Sci. 107 (2010) 8177–8182.
Software information available on the Pyle …
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