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62 Member Publications for June 2012

The Bin3 RNA methyltransferase targets 7SK RNA to control transcription and translation.
1. Wiley Interdiscip Rev RNA - published June 29, 2012
2. Cosgrove MS, Ding Y, Rennie WA, Lane MJ, Hanes SD
The interdomain linker of AAV-2 Rep68 is an integral part of its oligomerization domain: role of a conserved SF3 helicase residue in oligomerization.
1. PLoS Pathog - published June 22, 2012
2. Zarate-Perez F, Bardelli M, Burgner JW 2nd, Villamil-Jarauta M, Das K, Kekilli D, Mansilla-Soto J, Linden RM, Escalante CR
Caspase inhibitors of the P35 family are more active when purified from yeast than bacteria.
1. PLoS One - published June 22, 2012
2. Brand IL, Civciristov S, Taylor NL, Talbo GH, Pantaki-Eimany D, Levina V, Clem RJ, Perugini MA, Kvansakul M, Hawkins CJ
FRET-based localization of fluorescent protein insertions within the ryanodine receptor type 1.
1. PLoS One - published June 22, 2012
2. Raina SA, Tsai J, Samsó M, Fessenden JD
Asymmetry in the homodimeric ABC transporter MsbA recognized by a DARPin.
1. J Biol Chem - published June 8, 2012
2. Mittal A, Böhm S, Grütter MG, Bordignon E, Seeger MA
Mechanism of foreign DNA selection in a bacterial adaptive immune system.
1. Mol Cell - published June 8, 2012
2. Sashital DG, Wiedenheft B, Doudna JA
The three-dimensional structure of the cadherin-catenin complex.
1. Subcell Biochem - published June 8, 2012
2. Ishiyama N, Ikura M
Stemming danger with Golgified BAX.
1. Mol Cell - published June 8, 2012
2. Walensky LD
Improving the accuracy of macromolecular structure refinement at 7 Å resolution.
1. Structure - published June 6, 2012
2. Brunger AT, Adams PD, Fromme P, Fromme R, Levitt M, Schröder GF
Complex phenotypes in mosquitoes and mice associated with neutralization escape of a Dengue virus type 1 monoclonal antibody.
1. Virology - published June 5, 2012
2. Shrestha B, Austin SK, Dowd KA, Prasad AN, Youn S, Pierson TC, Fremont DH, Ebel GD, Diamond MS
Energy coupling factor-type ABC transporters for vitamin uptake in prokaryotes.
1. Biochemistry - published June 5, 2012
2. Erkens GB, Majsnerowska M, ter Beek J, Slotboom DJ
Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR.
1. Biochemistry - published June 5, 2012
2. Fleischhacker AS, Stubna A, Hsueh KL, Guo Y, Teter SJ, Rose JC, Brunold TC, Markley JL, Münck E, Kiley PJ
Structure and functional interaction of the extracellular domain of human GABA(B) receptor GBR2.
1. Nat Neurosci - published June 3, 2012
2. Geng Y, Xiong D, Mosyak L, Malito DL, Kniazeff J, Chen Y, Burmakina S, Quick M, Bush M, Javitch JA, Pin JP, Fan QR
Molecular basis for the anchoring of proto-oncoprotein Nup98 to the cytoplasmic face of the nuclear pore complex.
1. J Mol Biol - published June 2, 2012
2. Stuwe T, von Borzyskowski LS, Davenport AM, Hoelz A
Temporal resolution of autophosphorylation for normal and oncogenic forms of EGFR and differential effects of gefitinib.
1. Biochemistry - published June 2, 2012
2. Kim Y, Li Z, Apetri M, Luo B, Settleman JE, Anderson KS
Boroalkyl group migration provides a versatile entry into α-aminoboronic acid derivatives.
1. J Am Chem Soc - published June 2, 2012
2. He Z, Zajdlik A, St Denis JD, Assem N, Yudin AK
Dimerization of the transmembrane domain of human tetherin in membrane mimetic environments.
1. Biochemistry - published June 2, 2012
2. Cole G, Simonetti K, Ademi I, Sharpe S
Mechanistic basis for low threshold mechanosensitivity in voltage-dependent K+ channels.
1. Proc Natl Acad Sci U S A - published June 2, 2012
2. Schmidt D, del Mármol J, MacKinnon R
Purification and characterization of the human γ-secretase activating protein.
1. Biochemistry - published June 2, 2012
2. Deatherage CL, Hadziselimovic A, Sanders CR
Structure of yeast Argonaute with guide RNA.
1. Nature - published June 2, 2012
2. Nakanishi K, Weinberg DE, Bartel DP, Patel DJ
New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
1. Nat Rev Mol Cell Biol - published June 2, 2012
2. Luger K, Dechassa ML, Tremethick DJ
A phage tubulin assembles dynamic filaments by an atypical mechanism to center viral DNA within the host cell.
1. Cell - published June 2, 2012
2. Kraemer JA, Erb ML, Waddling CA, Montabana EA, Zehr EA, Wang H, Nguyen K, Pham DS, Agard DA, Pogliano J
Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern.
1. J Cell Biol - published June 2, 2012
2. Rank KC, Chen CJ, Cope J, Porche K, Hoenger A, Gilbert SP, Rayment I
Stochastic model of clathrin-coated pit assembly.
1. Biophys J - published June 2, 2012
2. Banerjee A, Berezhkovskii A, Nossal R
The C-terminal domain of eukaryotic initiation factor 5 promotes start codon recognition by its dynamic interplay with eIF1 and eIF2β.
1. Cell Rep - published June 2, 2012
2. Luna RE, Arthanari H, Hiraishi H, Nanda J, Martin-Marcos P, Markus MA, Akabayov B, Milbradt AG, Luna LE, Seo HC, Hyberts SG, Fahmy A, Reibarkh M, Miles D, Hagner PR, O'Day EM, Yi T, Marintchev A, Hinnebusch AG, Lorsch JR, Asano K, Wagner G
Inhibition of Granzyme B by PI-9 protects prostate cancer cells from apoptosis.
1. Prostate - published June 1, 2012
2. Ray M, Hostetter DR, Loeb CR, Simko J, Craik CS
The LovK-LovR two-component system is a regulator of the general stress pathway in Caulobacter crescentus.
1. J Bacteriol - published June 1, 2012
2. Foreman R, Fiebig A, Crosson S
Human monoclonal antibodies to pandemic 1957 H2N2 and pandemic 1968 H3N2 influenza viruses.
1. J Virol - published June 1, 2012
2. Krause JC, Tsibane T, Tumpey TM, Huffman CJ, Albrecht R, Blum DL, Ramos I, Fernandez-Sesma A, Edwards KM, García-Sastre A, Basler CF, Crowe JE Jr
Interferometer-based structured-illumination microscopy utilizing complementary phase relationship through constructive and destructive image detection by two cameras.
1. J Microsc - published June 1, 2012
2. Shao L, Winoto L, Agard DA, Gustafsson MG, Sedat JW
Protein landscape at Drosophila melanogaster telomere-associated sequence repeats.
1. Mol Cell Biol - published June 1, 2012
2. Antão JM, Mason JM, Déjardin J, Kingston RE
Probing the catalytic mechanism of a C-3'-methyltransferase involved in the biosynthesis of D-tetronitrose.
1. Protein Sci - published June 1, 2012
2. Bruender NA, Holden HM
Dibenzophenanthridines as inhibitors of glutaminase C and cancer cell proliferation.
1. Mol Cancer Ther - published June 1, 2012
2. Katt WP, Ramachandran S, Erickson JW, Cerione RA
Distinct effects of two HIV-1 capsid assembly inhibitor families that bind the same site within the N-terminal domain of the viral CA protein.
1. J Virol - published June 1, 2012
2. Lemke CT, Titolo S, von Schwedler U, Goudreau N, Mercier JF, Wardrop E, Faucher AM, Coulombe R, Banik SS, Fader L, Gagnon A, Kawai SH, Rancourt J, Tremblay M, Yoakim C, Simoneau B, Archambault J, Sundquist WI, Mason SW
Individual variation and longitudinal pattern of genome-wide DNA methylation from birth to the first two years of life.
1. Epigenetics - published June 1, 2012
2. X Wang, R Liu, G Wang, HJ Tsai, X Hong, H Xie, Y Zhou, X Liu, D Wang
Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA.
1. EMBO J - published June 1, 2012
2. Haurwitz RE, Sternberg SH, Doudna JA
A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins.
1. J Biomol NMR - published June 1, 2012
2. Barraud P, Schubert M, Allain FH
A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.
1. Protein Sci - published June 1, 2012
2. Shandiz AT, Baxa MC, Sosnick TR
The structure of the periplasmic nickel-binding protein NikA provides insights for artificial metalloenzyme design.
1. J Biol Inorg Chem - published June 1, 2012
2. Cherrier MV, Girgenti E, Amara P, Iannello M, Marchi-Delapierre C, Fontecilla-Camps JC, Ménage S, Cavazza C
State and parameter estimation of the heat shock response system using Kalman and particle filters.
1. Bioinformatics - published June 1, 2012
2. M Niranjan, X Liu
Metal-ion rescue revisited: biochemical detection of site-bound metal ions important for RNA folding.
1. RNA - published June 1, 2012
2. Frederiksen JK, Li NS, Das R, Herschlag D, Piccirilli JA
Visual neurotransmission in Drosophila requires expression of Fic in glial capitate projections.
1. Nat Neurosci - published June 1, 2012
2. Rahman M, Ham H, Liu X, Sugiura Y, Orth K, Krämer H
Proton SBRT for medically inoperable stage I NSCLC.
1. J Thorac Oncol - published June 1, 2012
2. Westover KD, Seco J, Adams JA, Lanuti M, Choi NC, Engelsman M, Willers H
Thinking outside the cell: how cadherins drive adhesion.
1. Trends Cell Biol - published June 1, 2012
2. Brasch J, Harrison OJ, Honig B, Shapiro L
Structural insights into RNA recognition and activation of RIG-I-like receptors.
1. Curr Opin Struct Biol - published June 1, 2012
2. Leung DW, Amarasinghe GK
Discovery of small molecules that bind to K-Ras and inhibit Sos-mediated activation.
1. Angew Chem Int Ed Engl - published June 1, 2012
2. Sun Q, Burke JP, Phan J, Burns MC, Olejniczak ET, Waterson AG, Lee T, Rossanese OW, Fesik SW
Protein lysine acylation and cysteine succination by intermediates of energy metabolism.
1. ACS Chem Biol - published June 1, 2012
2. Lin H, Su X, He B
Ribonucleases P/MRP and the expanding ribonucleoprotein world.
1. IUBMB Life - published June 1, 2012
2. Hernandez-Cid A, Aguirre-Sampieri S, Diaz-Vilchis A, Torres-Larios A
Pre-steady state kinetic analysis of cyclobutyl derivatives of 2'-deoxyadenosine 5'-triphosphate as inhibitors of HIV-1 reverse transcriptase.
1. Bioorg Med Chem Lett - published June 1, 2012
2. Kim J, Wang L, Li Y, Becnel KD, Frey KM, Garforth SJ, Prasad VR, Schinazi RF, Liotta DC, Anderson KS
Structure-based design of 2,6,7-trisubstituted-7H-pyrrolo[2,3-d]pyrimidines as Aurora kinases inhibitors.
1. Bioorg Med Chem Lett - published June 1, 2012
2. Le Brazidec JY, Pasis A, Tam B, Boykin C, Wang D, Marcotte DJ, Claassen G, Chong JH, Chao J, Fan J, Nguyen K, Silvian L, Ling L, Zhang L, Choi M, Teng M, Pathan N, Zhao S, Li T, Taveras A
A versatile scaffold for site-specific modification of cyclic tetrapeptides.
1. Org Lett - published June 1, 2012
2. White CJ, Yudin AK
The prototypic class Ia ribonucleotide reductase from Escherichia coli: still surprising after all these years.
1. Biochem Soc Trans - published June 1, 2012
2. CL Drennan, CM Zimanyi, N Ando, EJ Brignole
A stapled BIM peptide overcomes apoptotic resistance in hematologic cancers.
1. J Clin Invest - published June 1, 2012
2. LaBelle JL, Katz SG, Bird GH, Gavathiotis E, Stewart ML, Lawrence C, Fisher JK, Godes M, Pitter K, Kung AL, Walensky LD
The structures of COPI-coated vesicles reveal alternate coatomer conformations and interactions.
1. Science - published June 1, 2012
2. Faini M, Prinz S, Beck R, Schorb M, Riches JD, Bacia K, Brügger B, Wieland FT, Briggs JA
Functional modulation of a protein folding landscape via side-chain distortion.
1. Proc Natl Acad Sci U S A - published June 1, 2012
2. Kelch BA, Salimi NL, Agard DA
The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.
1. Science - published June 1, 2012
2. Barrett PJ, Song Y, Van Horn WD, Hustedt EJ, Schafer JM, Hadziselimovic A, Beel AJ, Sanders CR
Critical features for biosynthesis, stability, and functionality of a G protein-coupled receptor uncovered by all-versus-all mutations.
1. Proc Natl Acad Sci U S A - published June 1, 2012
2. Schlinkmann KM, Honegger A, Türeci E, Robison KE, Lipovšek D, Plückthun A
Regulated assembly of the transenvelope protein complex required for lipopolysaccharide export.
1. Biochemistry - published June 1, 2012
2. Freinkman E, Okuda S, Ruiz N, Kahne D
Structural dynamics of the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase.
1. Nat Struct Mol Biol - published June 1, 2012
2. Palencia A, Crépin T, Vu MT, Lincecum TL Jr, Martinis SA, Cusack S
Assembly of mRNA-protein complexes for directional mRNA transport in eukaryotes--an overview.
1. Curr Protein Pept Sci - published June 1, 2012
2. Jansen RP, Niessing D
Convergent synthesis of aminomethylene peptidomimetics.
1. Nat Protoc - published June 1, 2012
2. Assem N, Yudin AK
Fragment-Based Discovery of 7-Azabenzimidazoles as Potent, Highly Selective, and Orally Active CDK4/6 Inhibitors.
1. ACS Med Chem Lett - published June 1, 2012
2. Cho YS, Angove H, Brain C, Chen CH, Cheng H, Cheng R, Chopra R, Chung K, Congreve M, Dagostin C, Davis DJ, Feltell R, Giraldes J, Hiscock SD, Kim S, Kovats S, Lagu B, Lewry K, Loo A, Lu Y, Luzzio M, Maniara W, McMenamin R, Mortenson PN, Benning R, O'Reilly M, Rees DC, Shen J, Smith T, Wang Y, Williams G, Woolford AJ, Wrona W, Xu M, Yang F, Howard S
Free Energy Guided Sampling.
1. J Chem Theory Comput - published June 1, 2012
2. Zhou T, Caflisch A