Member Publications

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60 Member Publications for April 2012

Inflammation and Cancer: Chemical Approaches to Mechanisms, Imaging, and Treatment.
1. J Org Chem - published April 30, 2012
2. LJ Marnett
Ligand symmetry-equivalence on thiolate protected gold nanoclusters determined by NMR spectroscopy.
1. Nanoscale - published April 30, 2012
2. CJ Ackerson, RL Whetten, AR Simone, CL Heinecke, OA Wong
Unexpected fold in the circumsporozoite protein target of malaria vaccines.
1. Proc Natl Acad Sci U S A - published April 30, 2012
2. TA Springer, C Lu, G Song, LZ Mi, AC Koksal, MB Doud
Conformational states of a bacterial α2-macroglobulin resemble those of human complement C3.
1. PLoS One - published April 25, 2012
2. Neves D, Estrozi LF, Job V, Gabel F, Schoehn G, Dessen A
Three-dimensionally ordered macroporous silicon films made by electrodeposition from an ionic liquid.
1. Phys Chem Chem Phys - published April 21, 2012
2. F Endres, Y Li, J Zhao, D Ge, Y Zhang, X Liu
Structure of an intermediate state in protein folding and aggregation.
1. Science - published April 20, 2012
2. LE Kay, M Vendruscolo, S Sharpe, A Zarrine-Afsar, P Lundström, P Walsh, A Cavalli, P Robustelli, P Neudecker
Coumarin-derived transformable fluorescent sensor for Zn(2+).
1. Chem Commun (Camb) - published April 18, 2012
2. X Liu, Z Xu, DR Spring, J Pan
Investigation of the proteolytic functions of an expanded cercarial elastase gene family in Schistosoma mansoni.
1. PLoS Negl Trop Dis - published April 18, 2012
2. Ingram JR, Rafi SB, Eroy-Reveles AA, Ray M, Lambeth L, Hsieh I, Ruelas D, Lim KC, Sakanari J, Craik CS, Jacobson MP, McKerrow JH
A facile synthesis of octa(carboxyphenyl)silsesquioxane.
1. Dalton Trans - published April 18, 2012
2. M Chen, Z Fu, X Liu, K Xu, H Cai
Multiple Repeat Elements Within the FAM21 Tail Link the WASH Actin Regulatory Complex to the Retromer.
1. Mol Biol Cell - published April 18, 2012
2. MK Rosen, DD Billadeau, TS Gomez, D Jia
Principal component analysis of dynamic fluorescence tomography in measurement space.
1. Phys Med Biol - published April 17, 2012
2. J Bai, J Luo, B Zhang, X Liu
Dimerization of the plant defensin NaD1 enhances its antifungal activity.
1. J Biol Chem - published April 17, 2012
2. MD Hulett, M Kvansakul, MA Anderson, MA Perugini, C Dogovski, NL van der Weerden, AA Baxter, N Kirby, NP Cowieson, IK Poon, GD Mills, FT Lay
Metabotropic glutamate receptor 4 (mGlu(4))-positive allosteric modulators for the treatment of Parkinson's disease: historical perspective and review of the patent literature.
1. Expert Opin Ther Pat - published April 16, 2012
2. CR Hopkins, CW Lindsley
Analysis of high-affinity assembly for AMPA receptor amino-terminal domains.
1. J Gen Physiol - published April 16, 2012
2. P Schuck, ML Mayer, GH Patterson, TM Laue, Jr Casillas E, CA May, A Balbo, J Kumar, PH Brown, AJ Berger, H Zhao
Pimarane diterpenes from the fungus Epicoccum sp. HS-1 associated with Apostichopus japonicus.
1. Bioorg Med Chem Lett - published April 15, 2012
2. Y Lin, Z She, W Li, C Liu, A Jia, X Liu, F Wei, Y Zhang, J Zhang, X Xia
Small-molecule inhibitors of dengue-virus entry.
1. PLoS Pathog - published April 13, 2012
2. Schmidt AG, Lee K, Yang PL, Harrison SC
Crystal structure of a group II intron in the pre-catalytic state.
1. Nat Struct Mol Biol - published April 8, 2012
2. Chan RT, Robart AR, Rajashankar KR, Pyle AM, Toor N
Engineering aggregation resistance in IgG by two independent mechanisms: lessons from comparison of Pichia pastoris and mammalian cell expression.
1. J Mol Biol - published April 6, 2012
2. Schaefer JV, Plückthun A
A template RNA entry channel in the fingers domain of the poliovirus polymerase.
1. J Mol Biol - published April 6, 2012
2. OB Peersen, DJ Barton, KG Haworth, BJ Kempf, MG Kortus
A 3D framework for understanding enterovirus 71.
1. Nat Struct Mol Biol - published April 4, 2012
2. JM Hogle
XPF-ERCC1: on the bubble.
1. Structure - published April 4, 2012
2. Shell SM, Chazin WJ
Fabs enable single particle cryoEM studies of small proteins.
1. Structure - published April 4, 2012
2. Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Li X, Alian A, Griner SL, Juge N, Yu Y, Mergel CM, Chaparro-Riggers J, Strop P, Tampé R, Edwards RH, Stroud RM, Craik CS, Cheng Y
Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.
1. Proc Natl Acad Sci U S A - published April 3, 2012
2. Kapp GT, Liu S, Stein A, Wong DT, Reményi A, Yeh BJ, Fraser JS, Taunton J, Lim WA, Kortemme T
Allosteric Activation of the Phosphoinositide Phosphatase Sac1 by Anionic Phospholipids.
1. Biochemistry - published April 3, 2012
2. Y Mao, MS Cosgrove, A Patel, X Wu, CJ Stefan, F Hsu, S Zhong
Bicelles at low concentrations.
1. Mol Pharm - published April 2, 2012
2. Lu Z, Van Horn WD, Chen J, Mathew S, Zent R, Sanders CR
Amino acid templating mechanisms in selection of nucleotides opposite abasic sites by a family a DNA polymerase.
1. J Biol Chem - published April 2, 2012
2. Obeid S, Welte W, Diederichs K, Marx A
Structure-function relationships in [FeFe]-hydrogenase active site maturation.
1. J Biol Chem - published April 2, 2012
2. Nicolet Y, Fontecilla-Camps JC
Peptides from second extracellular loop of C-C chemokine receptor type 5 (CCR5) inhibit diverse strains of HIV-1.
1. J Biol Chem - published April 2, 2012
2. Dogo-Isonagie C, Lam S, Gustchina E, Acharya P, Yang Y, Shahzad-ul-Hussan S, Clore GM, Kwong PD, Bewley CA
Synthesis of heterobifunctional protein fusions using copper-free click chemistry and the aldehyde tag.
1. Angew Chem Int Ed Engl - published April 2, 2012
2. Hudak JE, Barfield RM, de Hart GW, Grob P, Nogales E, Bertozzi CR, Rabuka D
Catalytic mechanism of perosamine N-acetyltransferase revealed by high-resolution X-ray crystallographic studies and kinetic analyses.
1. Biochemistry - published April 2, 2012
2. Thoden JB, Reinhardt LA, Cook PD, Menden P, Cleland WW, Holden HM
Lead optimization studies on FimH antagonists: discovery of potent and orally bioavailable ortho-substituted biphenyl mannosides.
1. J Med Chem - published April 2, 2012
2. Han Z, Pinkner JS, Ford B, Chorell E, Crowley JM, Cusumano CK, Campbell S, Henderson JP, Hultgren SJ, Janetka JW
Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.
1. Proc Natl Acad Sci U S A - published April 2, 2012
2. Larson MH, Zhou J, Kaplan CD, Palangat M, Kornberg RD, Landick R, Block SM
Bax regulates primary necrosis through mitochondrial dynamics.
1. Proc Natl Acad Sci U S A - published April 2, 2012
2. Whelan RS, Konstantinidis K, Wei AC, Chen Y, Reyna DE, Jha S, Yang Y, Calvert JW, Lindsten T, Thompson CB, Crow MT, Gavathiotis E, Dorn GW 2nd, O'Rourke B, Kitsis RN
The E. coli CsgB nucleator of curli assembles to β-sheet oligomers that alter the CsgA fibrillization mechanism.
1. Proc Natl Acad Sci U S A - published April 2, 2012
2. Shu Q, Crick SL, Pinkner JS, Ford B, Hultgren SJ, Frieden C
Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III.
1. Proc Natl Acad Sci U S A - published April 2, 2012
2. Bezerra GA, Dobrovetsky E, Viertlmayr R, Dong A, Binter A, Abramic M, Macheroux P, Dhe-Paganon S, Gruber K
Clamp loader ATPases and the evolution of DNA replication machinery.
1. BMC Biol - published April 2, 2012
2. Kelch BA, Makino DL, O'Donnell M, Kuriyan J
A piRNA to remember.
1. Cell - published April 2, 2012
2. Moazed D
¹H, ¹³C, ¹⁵N and ³¹P chemical shift assignments of a human Xist RNA A-repeat tetraloop hairpin essential for X-chromosome inactivation.
1. Biomol NMR Assign - published April 1, 2012
2. Duszczyk MM, Sattler M
Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures.
1. Nucleic Acids Res - published April 1, 2012
2. Kim DN, Kilchherr F, Dietz H, Bathe M
Characterization of fibrillar collagen types using multi-dimensional multiphoton laser scanning microscopy.
1. Int J Cosmet Sci - published April 1, 2012
2. Lutz V, Sattler M, Gallinat S, Wenck H, Poertner R, Fischer F
Structure of the yeast U2/U6 snRNA complex.
1. RNA - published April 1, 2012
2. Burke JE, Sashital DG, Zuo X, Wang YX, Butcher SE
Image formation in cellular X-ray microscopy.
1. J Struct Biol - published April 1, 2012
2. Oton J, Sorzano CO, Pereiro E, Cuenca-Alba J, Navarro R, Carazo JM, Marabini R
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.
1. RNA - published April 1, 2012
2. Baird NJ, Zhang J, Hamma T, Ferré-D'Amaré AR
Lysophospholipid presentation by CD1d and recognition by a human Natural Killer T-cell receptor.
1. EMBO J - published April 1, 2012
2. López-Sagaseta J, Sibener LV, Kung JE, Gumperz J, Adams EJ
Structural insights into the Type II secretion nanomachine.
1. Curr Opin Struct Biol - published April 1, 2012
2. McLaughlin LS, Haft RJ, Forest KT
Thioester-isocyanides: versatile reagents for the synthesis of cycle-tail peptides.
1. Chem Commun (Camb) - published April 1, 2012
2. Rotstein BH, Winternheimer DJ, Yin LM, Deber CM, Yudin AK
Nucleosome recognition and spacing by chromatin remodelling factor ISW1a.
1. Biochem Soc Trans - published April 1, 2012
2. TJ Richmond
A constitutively active Gα subunit provides insights into the mechanism of G protein activation.
1. Biochemistry - published April 1, 2012
2. Singh G, Ramachandran S, Cerione RA
A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin.
1. Nat Chem Biol - published April 1, 2012
2. M Estelle, S Kepinski, R Napier, N Zheng, H Mao, G Parry, X Tan, LB Sheard, L Armitage, W Brandt, A Ivetac, C De Oliveira, S Lee, LI Calderón Villalobos
Biotinylation of lysine method identifies acetylated histone H3 lysine 79 in Saccharomyces cerevisiae as a substrate for Sir2.
1. Proc Natl Acad Sci U S A - published April 1, 2012
2. Bheda P, Swatkoski S, Fiedler KL, Boeke JD, Cotter RJ, Wolberger C
Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
1. Proc Natl Acad Sci U S A - published April 1, 2012
2. Wang F, Marshall CB, Yamamoto K, Li GY, Gasmi-Seabrook GM, Okada H, Mak TW, Ikura M
Research priorities. Shining light into black boxes.
1. Science - published April 1, 2012
2. Morin A, Urban J, Adams PD, Foster I, Sali A, Baker D, Sliz P
Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia.
1. Nature - published April 1, 2012
2. Smith CC, Wang Q, Chin CS, Salerno S, Damon LE, Levis MJ, Perl AE, Travers KJ, Wang S, Hunt JP, Zarrinkar PP, Schadt EE, Kasarskis A, Kuriyan J, Shah NP
Kernel-based parametric analytical model of source intensity distributions in lithographic tools.
1. Appl Opt - published April 1, 2012
2. Liu S, Liu W, Zhou X, Gong P
Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.
1. Acta Crystallogr D Biol Crystallogr - published April 1, 2012
2. Brunger AT, Das D, Deacon AM, Grant J, Terwilliger TC, Read RJ, Adams PD, Levitt M, Schröder GF
Crystallization and preliminary crystallographic characterization of the N-terminal Kunitz domain of boophilin.
1. Acta Crystallogr Sect F Struct Biol Cryst Commun - published April 1, 2012
2. Cereija TB, Figueiredo AC, de Sanctis D, Tanaka AS, Pereira PJ
RNAi in fission yeast finds new targets and new ways of targeting at the nuclear periphery.
1. Genes Dev - published April 1, 2012
2. Holoch D, Moazed D
Ciliary and nuclear transport: different places, similar routes?
1. Dev Cell - published April 1, 2012
2. Obado SO, Rout MP
Second-site suppressors of HIV-1 capsid mutations: restoration of intracellular activities without correction of intrinsic capsid stability defects.
1. Retrovirology - published April 1, 2012
2. Yang R, Shi J, Byeon IJ, Ahn J, Sheehan JH, Meiler J, Gronenborn AM, Aiken C
The Sec7 Arf-GEF is recruited to the trans-Golgi network by positive feedback.
1. Dev Cell - published April 1, 2012
2. Richardson BC, McDonold CM, Fromme JC