Member Publications

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60 Member Publications for June 2011

Structural components and architectures of RNA exosomes.
1. Adv Exp Med Biol - published June 30, 2011
2. Januszyk K, Lima CD
Calmodulin overexpression does not alter Cav1.2 function or oligomerization state.
1. Channels (Austin) - published June 30, 2011
2. Findeisen F, Tolia A, Arant R, Kim EY, Isacoff E, Minor DL Jr
Variable sequences outside the SAM-binding core critically influence the conformational dynamics of the SAM-III/SMK box riboswitch.
1. J Mol Biol - published June 24, 2011
2. A Ke, TM Henkin, A Chowdhury, F Ding, AM Smith, C Lu
Design and characterization of epitope-scaffold immunogens that present the motavizumab epitope from respiratory syncytial virus.
1. J Mol Biol - published June 24, 2011
2. WR Schief, BS Graham, Y Yang, M Chen, BE Correia, JS McLellan, PD Kwong
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions.
1. Proc Natl Acad Sci U S A - published June 21, 2011
2. JA Doudna, MJ Dickman, EJ Boekema, AJ Heck, W Westphal, A Barendregt, K Zhou, SP Waghmare, JB Bultema, E van Duijn, B Wiedenheft
Ligand-gated diffusion across the bacterial outer membrane.
1. Proc Natl Acad Sci U S A - published June 21, 2011
2. B van den Berg, DR Patel, EM Hearn, H Pham, M Indic, BW Lepore
Isolation of an activator-dependent, promoter-specific chromatin remodeling factor.
1. Proc Natl Acad Sci U S A - published June 21, 2011
2. RD Kornberg, AH Ehrensberger
Small molecule inhibition of the TNF family cytokine CD40 ligand through a subunit fracture mechanism.
1. ACS Chem Biol - published June 17, 2011
2. A Whitty, G Kumaravel, Z Zheng, L Su, L Sun, A Fung, B Cunningham, F Qian, ES Day, TG Cachero, K Strauch, JE Friedman, LF Silvian
Structural biology by mass spectrometry: mapping protein interaction surfaces of membrane receptor complexes with ICAT.
1. J Mol Biol - published June 17, 2011
2. BR Crane
E2 conjugating enzyme selectivity and requirements for function of the E3 ubiquitin ligase CHIP.
1. J Biol Chem - published June 17, 2011
2. WJ Chazin, S Dhe-Paganon, Y Yue, SE Soss
Coiled-coil domains enhance the membrane association of Salmonella type III effectors.
1. Cell Microbiol - published June 16, 2011
2. O Steele-Mortimer, CK Yip, E Pérez-Rueda, JA Ibarra, LA Knodler
Latent TGF-β structure and activation.
1. Nature - published June 15, 2011
2. TA Springer, T Walz, L Mi, X Chen, R Wang, J Zhu, M Shi
Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB.
1. Proc Natl Acad Sci U S A - published June 14, 2011
2. S Garneau-Tsodikova, OV Tsodikov, VR Porter, T Biswas, W Chen
Elucidating glycosaminoglycan-protein-protein interactions using carbohydrate microarray and computational approaches.
1. Proc Natl Acad Sci U S A - published June 14, 2011
2. LC Hsieh-Wilson, 3rd Goddard WA, KC Garcia, R Abrol, SE Tully, PM Clark, CJ Rogers
Determination of structural models of the complex between the cytoplasmic domain of erythrocyte band 3 and ankyrin-R repeats 13-24.
1. J Biol Chem - published June 10, 2011
2. AH Beth, EJ Hustedt, TP Lybrand, JA Smith, CS Parry, CW Moth, SJ Edwards, CE Cobb, Z Zhou, S Brandon, S Kim
The Leishmania donovani UMP synthase is essential for promastigote viability and has an unusual tetrameric structure that exhibits substrate-controlled oligomerization.
1. J Biol Chem - published June 10, 2011
2. SE Ealick, B Ullman, B Chang, NS Carter, JM Boitz, DR Soysa, PA Yates, JB French
New tools in membrane protein determination.
1. F1000 Biol Rep - published June 10, 2011
2. Stroud RM
Nucleosome structure(s) and stability: variations on a theme.
1. Annu Rev Biophys - published June 9, 2011
2. K Luger, AJ Andrews
The cyanobacterial circadian system: from biophysics to bioevolution.
1. Annu Rev Biophys - published June 9, 2011
2. M Egli, PL Stewart, CH Johnson
Primer preactivation of peptidoglycan polymerases.
1. J Am Chem Soc - published June 8, 2011
2. S Walker, DE Kahne, Y Rebets, Y Wu, H Tsukamoto, Y Sumida, TJ Lupoli, TS Wang
Structural basis for catalytic activation of a serine recombinase.
1. Structure - published June 8, 2011
2. Keenholtz RA, Rowland SJ, Boocock MR, Stark WM, Rice PA
Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.
1. Structure - published June 8, 2011
2. DJ Patel, JM Essigmann, JC Delaney, O Rechkoblit
β-Barrel membrane protein assembly by the Bam Complex.
1. Annu Rev Biochem - published June 7, 2011
2. D Kahne, TJ Silhavy, CL Hagan
The structure of the nuclear pore complex.
1. Annu Rev Biochem - published June 7, 2011
2. G Blobel, EW Debler, A Hoelz
Recognition of the centromere-specific histone Cse4 by the chaperone Scm3.
1. Proc Natl Acad Sci U S A - published June 7, 2011
2. SC Harrison, US Cho
Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.
1. Nat Struct Mol Biol - published June 5, 2011
2. DJ Patel, RB Darnell, D Clain, C Chen, A Polonskaia, T Raslin, S Ilin, A Majumdar, A Serganov, JC Darnell, V Kuryavyi, AT Phan
The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism.
1. J Biol Chem - published June 3, 2011
2. LS Beese, EY Wu
Fine epitope mapping of monoclonal antibodies against hemagglutinin of a highly pathogenic H5N1 influenza virus using yeast surface display.
1. Biochem Biophys Res Commun - published June 3, 2011
2. WA Marasco, Q Zhu, RO Donis, RC Liddington, AS Bennett, J Sui, T Han
Structure and function of the RedJ protein, a thioesterase from the prodiginine biosynthetic pathway in Streptomyces coelicolor.
1. J Biol Chem - published June 2, 2011
2. Whicher JR, Florova G, Sydor PK, Singh R, Alhamadsheh M, Challis GL, Reynolds KA, Smith JL
Palladium-catalyzed ring-contraction and ring-expansion reactions of cyclic allyl amines.
1. Angew Chem Int Ed Engl - published June 2, 2011
2. Dubovyk I, Pichugin D, Yudin AK
The E2 domains of APP and APLP1 share a conserved mode of dimerization.
1. Biochemistry - published June 2, 2011
2. Lee S, Xue Y, Hu J, Wang Y, Liu X, Demeler B, Ha Y
Structural model of the TRPP2/PKD1 C-terminal coiled-coil complex produced by a combined computational and experimental approach.
1. Proc Natl Acad Sci U S A - published June 2, 2011
2. Zhu J, Yu Y, Ulbrich MH, Li MH, Isacoff EY, Honig B, Yang J
An allosteric inhibitor of the human Cdc34 ubiquitin-conjugating enzyme.
1. Cell - published June 2, 2011
2. Ceccarelli DF, Tang X, Pelletier B, Orlicky S, Xie W, Plantevin V, Neculai D, Chou YC, Ogunjimi A, Al-Hakim A, Varelas X, Koszela J, Wasney GA, Vedadi M, Dhe-Paganon S, Cox S, Xu S, Lopez-Girona A, Mercurio F, Wrana J, Durocher D, Meloche S, Webb DR, Tyers M, Sicheri F
Contemporary strategies for peptide macrocyclization.
1. Nat Chem - published June 2, 2011
2. White CJ, Yudin AK
Client-loading conformation of the Hsp90 molecular chaperone revealed in the cryo-EM structure of the human Hsp90:Hop complex.
1. Mol Cell - published June 2, 2011
2. Southworth DR, Agard DA
The structural basis of modularity in ECF-type ABC transporters.
1. Nat Struct Mol Biol - published June 2, 2011
2. Erkens GB, Berntsson RP, Fulyani F, Majsnerowska M, Vujičić-Žagar A, Ter Beek J, Poolman B, Slotboom DJ
Fibrisoma limi gen. nov., sp. nov., a filamentous bacterium isolated from tidal flats.
1. Int J Syst Evol Microbiol - published June 1, 2011
2. Filippini M, Kaech A, Ziegler U, Bagheri HC
Expression of artificial microRNAs in tomato confers efficient and stable virus resistance in a cell-autonomous manner.
1. Transgenic Res - published June 1, 2011
2. Zhang X, Li H, Zhang J, Zhang C, Gong P, Ziaf K, Xiao F, Ye Z
Continuous low-dose fructose infusion does not reverse glucagon-mediated decrease in hepatic glucose utilization.
1. Metabolism - published June 1, 2011
2. Johnson PM, Chen SS, Santomango TS, Williams PE, Lacy DB, McGuinness OP
Mining electron density for functionally relevant protein polysterism in crystal structures.
1. Cell Mol Life Sci - published June 1, 2011
2. Fraser JS, Jackson CJ
Moving DNA around: DNA transposition and retroviral integration.
1. Curr Opin Struct Biol - published June 1, 2011
2. Montaño SP, Rice PA
Accurate modeling of single-particle cryo-EM images quantitates the benefits expected from using Zernike phase contrast.
1. J Struct Biol - published June 1, 2011
2. Hall RJ, Nogales E, Glaeser RM
Direct membrane association drives mitochondrial fission by the Parkinson disease-associated protein alpha-synuclein.
1. J Biol Chem - published June 1, 2011
2. Nakamura K, Nemani VM, Azarbal F, Skibinski G, Levy JM, Egami K, Munishkina L, Zhang J, Gardner B, Wakabayashi J, Sesaki H, Cheng Y, Finkbeiner S, Nussbaum RL, Masliah E, Edwards RH
Multiple transmembrane binding sites for p-trifluoromethyldiazirinyl-etomidate, a photoreactive Torpedo nicotinic acetylcholine receptor allosteric inhibitor.
1. J Biol Chem - published June 1, 2011
2. Hamouda AK, Stewart DS, Husain SS, Cohen JB
Unique ties between hepatitis C virus replication and intracellular lipids.
1. Trends Endocrinol Metab - published June 1, 2011
2. Herker E, Ott M
Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins.
1. J Mol Biol - published June 1, 2011
2. Cao W, Coman MM, Ding S, Henn A, Middleton ER, Bradley MJ, Rhoades E, Hackney DD, Pyle AM, De La Cruz EM
Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure.
1. Nat Struct Mol Biol - published June 1, 2011
2. Kley J, Schmidt B, Boyanov B, Stolt-Bergner PC, Kirk R, Ehrmann M, Knopf RR, Naveh L, Adam Z, Clausen T
Structure and mutational analysis of the archaeal GTP:AdoCbi-P guanylyltransferase (CobY) from Methanocaldococcus jannaschii: insights into GTP binding and dimerization.
1. Biochemistry - published June 1, 2011
2. Newmister SA, Otte MM, Escalante-Semerena JC, Rayment I
A central metabolic circuit controlled by QseC in pathogenic Escherichia coli.
1. Mol Microbiol - published June 1, 2011
2. Hadjifrangiskou M, Kostakioti M, Chen SL, Henderson JP, Greene SE, Hultgren SJ
Grid computing for improving conformational sampling in NMR structure calculation.
1. Bioinformatics - published June 1, 2011
2. Mareuil F, Blanchet C, Malliavin TE, Nilges M
Molecular design principles underlying β-strand swapping in the adhesive dimerization of cadherins.
1. Nat Struct Mol Biol - published June 1, 2011
2. Vendome J, Posy S, Jin X, Bahna F, Ahlsen G, Shapiro L, Honig B
A multiple stress-responsive gene ERD15 from Solanum pennellii confers stress tolerance in tobacco.
1. Plant Cell Physiol - published June 1, 2011
2. Ziaf K, Loukehaich R, Gong P, Liu H, Han Q, Wang T, Li H, Ye Z
Redistribution of caveolae during mitosis.
1. J Cell Sci - published June 1, 2011
2. Boucrot E, Howes MT, Kirchhausen T, Parton RG
Structural diversity of bacterial flagellar motors.
1. EMBO J - published June 1, 2011
2. Chen S, Beeby M, Murphy GE, Leadbetter JR, Hendrixson DR, Briegel A, Li Z, Shi J, Tocheva EI, Müller A, Dobro MJ, Jensen GJ
A molecular mechanism for circadian clock negative feedback.
1. Science - published June 1, 2011
2. Duong HA, Robles MS, Knutti D, Weitz CJ
Perforin pores in the endosomal membrane trigger the release of endocytosed granzyme B into the cytosol of target cells.
1. Nat Immunol - published June 1, 2011
2. Thiery J, Keefe D, Boulant S, Boucrot E, Walch M, Martinvalet D, Goping IS, Bleackley RC, Kirchhausen T, Lieberman J
Structural basis of thrombin-protease-activated receptor interactions.
1. IUBMB Life - published June 1, 2011
2. Gandhi PS, Chen Z, Appelbaum E, Zapata F, Di Cera E
Ligand activation of the prokaryotic pentameric ligand-gated ion channel ELIC.
1. PLoS Biol - published June 1, 2011
2. Zimmermann I, Dutzler R
New insights into HTLV-1 particle structure, assembly, and Gag-Gag interactions in living cells.
1. Viruses - published June 1, 2011
2. Fogarty KH, Zhang W, Grigsby IF, Johnson JL, Chen Y, Mueller JD, Mansky LM
Mutations in the DDR2 kinase gene identify a novel therapeutic target in squamous cell lung cancer.
1. Cancer Discov - published June 1, 2011
2. Hammerman PS, Sos ML, Ramos AH, Xu C, Dutt A, Zhou W, Brace LE, Woods BA, Lin W, Zhang J, Deng X, Lim SM, Heynck S, Peifer M, Simard JR, Lawrence MS, Onofrio RC, Salvesen HB, Seidel D, Zander T, Heuckmann JM, Soltermann A, Moch H, Koker M, Leenders F, Gabler F, Querings S, Ansén S, Brambilla E, Brambilla C, Lorimier P, Brustugun OT, Helland A, Petersen I, Clement JH, Groen H, Timens W, Sietsma H, Stoelben E, Wolf J, Beer DG, Tsao MS, Hanna M, Hatton C, Eck MJ, Janne PA, Johnson BE, Winckler W, Greulich H, Bass AJ, Cho J, Rauh D, Gray NS, Wong KK, Haura EB, Thomas RK, Meyerson M