Member Publications

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50 Member Publications for March 2011

The mechanism of nucleocytoplasmic transport through the nuclear pore complex.
1. Cold Spring Harb Symp Quant Biol - published March 31, 2011
2. Tetenbaum-Novatt J, Rout MP
Structure of betaglycan zona pellucida (ZP)-C domain provides insights into ZP-mediated protein polymerization and TGF-beta binding.
1. Proc Natl Acad Sci U S A - published March 29, 2011
Crystal structures of poly(ADP-ribose) polymerase-1 (PARP-1) zinc fingers bound to DNA: structural and functional insights into DNA-dependent PARP-1 activity.
1. J Biol Chem - published March 25, 2011
A semisynthetic Eph receptor tyrosine kinase provides insight into ligand-induced kinase activation.
1. Chem Biol - published March 25, 2011
Cryoelectron microscopy structures of the ribosome complex in intermediate states during tRNA translocation.
1. Proc Natl Acad Sci U S A - published March 22, 2011
Structure-activity analysis of diffusible lipid electrophiles associated with phospholipid peroxidation: 4-hydroxynonenal and 4-oxononenal analogues.
1. Chem Res Toxicol - published March 21, 2011
Relating form and function of EF-hand calcium binding proteins.
1. Acc Chem Res - published March 15, 2011
Solution-phase parallel synthesis and SAR of homopiperazinyl analogs as positive allosteric modulators of mGlu₄.
1. ACS Comb Sci - published March 14, 2011
Tandem acyl carrier proteins in the curacin biosynthetic pathway promote consecutive multienzyme reactions with a synergistic effect.
1. Angew Chem Int Ed Engl - published March 14, 2011
Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle.
1. J Biol Chem - published March 11, 2011
Synthesis and characterization of Au102(p-MBA)44 nanoparticles.
1. J Am Chem Soc - published March 9, 2011
Biochemical and structural characterization of WlbA from Bordetella pertussis and Chromobacterium violaceum: enzymes required for the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid.
1. Biochemistry - published March 8, 2011
2. Thoden JB, Holden HM
MicroRNA expression profiling identifies activated B cell status in chronic lymphocytic leukemia cells.
1. PLoS One - published March 8, 2011
Processing and turnover of the Hedgehog protein in the endoplasmic reticulum.
1. J Cell Biol - published March 7, 2011
Crystal structure of a charge engineered human lysozyme having enhanced bactericidal activity.
1. PLoS One - published March 7, 2011
2. Gill A, Scanlon TC, Osipovitch DC, Madden DR, Griswold KE
Interaction of selenoprotein W with 14-3-3 proteins: a computational approach.
1. J Proteome Res - published March 4, 2011
2. Musiani F, Ciurli S, Dikiy A
Crystal structure of the dynein motor domain.
1. Science - published March 4, 2011
2. Carter AP, Cho C, Jin L, Vale RD
The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.
1. Cell - published March 4, 2011
2. Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M
Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase.
1. EMBO J - published March 2, 2011
Redesigning allosteric activation in an enzyme.
1. Proc Natl Acad Sci U S A - published March 2, 2011
2. Rana S, Pozzi N, Pelc LA, Di Cera E
Cancer cell-derived microvesicles induce transformation by transferring tissue transglutaminase and fibronectin to recipient cells.
1. Proc Natl Acad Sci U S A - published March 2, 2011
2. Antonyak MA, Li B, Boroughs LK, Johnson JL, Druso JE, Bryant KL, Holowka DA, Cerione RA
A CHOP-regulated microRNA controls rhodopsin expression.
1. J Cell Biol - published March 2, 2011
2. Behrman S, Acosta-Alvear D, Walter P
The immutable recognition of CD1d.
1. Immunity - published March 2, 2011
2. Adams EJ, López-Sagaseta J
CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.
1. PLoS One - published March 2, 2011
2. de Vries SJ, Bonvin AM
Regulatory T cell expression of CLA or α(4)β(7) and skin or gut acute GVHD outcomes.
1. Bone Marrow Transplant - published March 1, 2011
2. Engelhardt BG, Jagasia M, Savani BN, Bratcher NL, Greer JP, Jiang A, Kassim AA, Lu P, Schuening F, Yoder SM, Rock MT, Crowe JE Jr
Overexpression of SlGMEs leads to ascorbate accumulation with enhanced oxidative stress, cold, and salt tolerance in tomato.
1. Plant Cell Rep - published March 1, 2011
2. Zhang C, Liu J, Zhang Y, Cai X, Gong P, Zhang J, Wang T, Li H, Ye Z
A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia.
1. Nucleic Acids Res - published March 1, 2011
2. Mallikaratchy PR, Ruggiero A, Gardner JR, Kuryavyi V, Maguire WF, Heaney ML, McDevitt MR, Patel DJ, Scheinberg DA
NMR and small-angle scattering-based structural analysis of protein complexes in solution.
1. J Struct Biol - published March 1, 2011
2. Madl T, Gabel F, Sattler M
Kukoamine B, a novel dual inhibitor of LPS and CpG DNA, is a potential candidate for sepsis treatment.
1. Br J Pharmacol - published March 1, 2011
2. Liu X, Zheng X, Wang N, Cao H, Lu Y, Long Y, Zhao K, Zhou H, Zheng J
Modeling pilus structures from sparse data.
1. J Struct Biol - published March 1, 2011
2. Campos M, Francetic O, Nilges M
Activity and function of rabbit muscle-specific creatine kinase at low temperature by mutation at gly268 to asn268.
1. Comp Biochem Physiol B Biochem Mol Biol - published March 1, 2011
2. Wu CL, Li YH, Lin HC, Yeh YH, Yan HY, Hsiao CD, Hui CF, Wu JL
A general and efficient approach for the construction of RNA oligonucleotides containing a 5'-phosphorothiolate linkage.
1. Nucleic Acids Res - published March 1, 2011
2. Li NS, Frederiksen JK, Koo SC, Lu J, Wilson TJ, Lilley DM, Piccirilli JA
Immunomodulatory drugs increase endothelial tissue factor expression in vitro.
1. Thromb Res - published March 1, 2011
2. Valsami S, Ruf W, Leikauf MS, Madon J, Kaech A, Asmis LM
Therapeutic potential of β-arrestin- and G protein-biased agonists.
1. Trends Mol Med - published March 1, 2011
2. Whalen EJ, Rajagopal S, Lefkowitz RJ
Crystal structure of human antibody 2909 reveals conserved features of quaternary structure-specific antibodies that potently neutralize HIV-1.
1. J Virol - published March 1, 2011
2. Changela A, Wu X, Yang Y, Zhang B, Zhu J, Nardone GA, O'Dell S, Pancera M, Gorny MK, Phogat S, Robinson JE, Stamatatos L, Zolla-Pazner S, Mascola JR, Kwong PD
Distinct ligand specificity of the Tiam1 and Tiam2 PDZ domains.
1. Biochemistry - published March 1, 2011
2. Shepherd TR, Hard RL, Murray AM, Pei D, Fuentes EJ
Identification and sequencing of a novel rodent gammaherpesvirus that establishes acute and latent infection in laboratory mice.
1. J Virol - published March 1, 2011
2. Loh J, Zhao G, Nelson CA, Coder P, Droit L, Handley SA, Johnson LS, Vachharajani P, Guzman H, Tesh RB, Wang D, Fremont DH, Virgin HW
A structure-based benchmark for protein-protein binding affinity.
1. Protein Sci - published March 1, 2011
2. Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J
Structural bases for the different anti-fibrillatory effects of chloroquine and quinidine.
1. Cardiovasc Res - published March 1, 2011
2. Noujaim SF, Stuckey JA, Ponce-Balbuena D, Ferrer-Villada T, López-Izquierdo A, Pandit SV, Sánchez-Chapula JA, Jalife J
Crystal structure of the human histone methyltransferase ASH1L catalytic domain and its implications for the regulatory mechanism.
1. J Biol Chem - published March 1, 2011
2. An S, Yeo KJ, Jeon YH, Song JJ
Augmenting β-augmentation: structural basis of how BamB binds BamA and may support folding of outer membrane proteins.
1. J Mol Biol - published March 1, 2011
2. Heuck A, Schleiffer A, Clausen T
Defining an allosteric circuit in the cysteine protease domain of Clostridium difficile toxins.
1. Nat Struct Mol Biol - published March 1, 2011
2. Shen A, Lupardus PJ, Gersch MM, Puri AW, Albrow VE, Garcia KC, Bogyo M
HTRA proteases: regulated proteolysis in protein quality control.
1. Nat Rev Mol Cell Biol - published March 1, 2011
2. Clausen T, Kaiser M, Huber R, Ehrmann M
Genetic mosaic analysis reveals a major role for frizzled 4 and frizzled 8 in controlling ureteric growth in the developing kidney.
1. Development - published March 1, 2011
2. Ye X, Wang Y, Rattner A, Nathans J
Structural characterization of CalO1: a putative orsellinic acid methyltransferase in the calicheamicin-biosynthetic pathway.
1. Acta Crystallogr D Biol Crystallogr - published March 1, 2011
2. Chang A, Singh S, Bingman CA, Thorson JS, Phillips GN Jr
Crucial role for DNA ligase III in mitochondria but not in Xrcc1-dependent repair.
1. Nature - published March 1, 2011
2. Simsek D, Furda A, Gao Y, Artus J, Brunet E, Hadjantonakis AK, Van Houten B, Shuman S, McKinnon PJ, Jasin M
A dystroglycan mutation associated with limb-girdle muscular dystrophy.
1. N Engl J Med - published March 1, 2011
2. Hara Y, Balci-Hayta B, Yoshida-Moriguchi T, Kanagawa M, Beltrán-Valero de Bernabé D, Gündeşli H, Willer T, Satz JS, Crawford RW, Burden SJ, Kunz S, Oldstone MB, Accardi A, Talim B, Muntoni F, Topaloğlu H, Dinçer P, Campbell KP
Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli.
1. PLoS Comput Biol - published March 1, 2011
2. Morris MK, Saez-Rodriguez J, Clarke DC, Sorger PK, Lauffenburger DA
β-arrestin deficiency protects against pulmonary fibrosis in mice and prevents fibroblast invasion of extracellular matrix.
1. Sci Transl Med - published March 1, 2011
2. Lovgren AK, Kovacs JJ, Xie T, Potts EN, Li Y, Foster WM, Liang J, Meltzer EB, Jiang D, Lefkowitz RJ, Noble PW
Measuring and modeling apoptosis in single cells.
1. Cell - published March 1, 2011
2. Spencer SL, Sorger PK