Member Publications

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59 Member Publications for July 2010

Structure of the human BK channel Ca2+-activation apparatus at 3.0 A resolution.
1. Science - published July 9, 2010
2. Yuan P, Leonetti MD, Pico AR, Hsiung Y, MacKinnon R
Structural basis for the coupling between activation and inactivation gates in K(+) channels.
1. Nature - published July 8, 2010
2. Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Dalmas O, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E
Structural mechanism of C-type inactivation in K(+) channels.
1. Nature - published July 8, 2010
2. Cuello LG, Jogini V, Cortes DM, Perozo E
In silico prediction of the 3D structure of trimeric asialoglycoprotein receptor bound to triantennary oligosaccharide.
1. J Am Chem Soc - published July 7, 2010
2. Ramadugu SK, Chung YH, Fuentes EJ, Rice KG, Margulis CJ
Sliding adhesion confers coherent motion to hair cell stereocilia and parallel gating to transduction channels.
1. J Neurosci - published July 7, 2010
2. Karavitaki KD, Corey DP
Look and see if it is time to induce protein expression in Escherichia coli cultures.
1. Biochemistry - published July 6, 2010
2. Kelley KD, Olive LQ, Hadziselimovic A, Sanders CR
BiP binding to the ER-stress sensor Ire1 tunes the homeostatic behavior of the unfolded protein response.
1. PLoS Biol - published July 6, 2010
2. Pincus D, Chevalier MW, Aragón T, van Anken E, Vidal SE, El-Samad H, Walter P
The tripartite capsid gene of Salmonella phage Gifsy-2 yields a capsid assembly pathway engaging features from HK97 and lambda.
1. Virology - published July 5, 2010
2. Effantin G, Figueroa-Bossi N, Schoehn G, Bossi L, Conway JF
Crystal structure of CCM3, a cerebral cavernous malformation protein critical for vascular integrity.
1. J Biol Chem - published July 3, 2010
2. Li X, Zhang R, Zhang H, He Y, Ji W, Min W, Boggon TJ
Insights into strand exchange in BTB domain dimers from the crystal structures of FAZF and Miz1.
1. J Mol Biol - published July 3, 2010
2. Stogios PJ, Cuesta-Seijo JA, Chen L, Pomroy NC, Privé GG
P. aeruginosa PilT structures with and without nucleotide reveal a dynamic type IV pilus retraction motor.
1. J Mol Biol - published July 3, 2010
2. Misic AM, Satyshur KA, Forest KT
Spectroscopic and computational characterization of substrate-bound mouse cysteine dioxygenase: nature of the ferrous and ferric cysteine adducts and mechanistic implications.
1. Biochemistry - published July 2, 2010
2. Gardner JD, Pierce BS, Fox BG, Brunold TC
Asymmetric recruitment of cIAPs by TRAF2.
1. J Mol Biol - published July 2, 2010
2. Mace PD, Smits C, Vaux DL, Silke J, Day CL
Cell-free synthesis and functional characterization of sphingolipid synthases from parasitic trypanosomatid protozoa.
1. J Biol Chem - published July 2, 2010
2. Sevova ES, Goren MA, Schwartz KJ, Hsu FF, Turk J, Fox BG, Bangs JD
Solution NMR structure of the C-terminal DNA binding domain of Mcm10 reveals a conserved MCM motif.
1. J Biol Chem - published July 2, 2010
2. Robertson PD, Chagot B, Chazin WJ, Eichman BF
Molecular architecture of a C-3'-methyltransferase involved in the biosynthesis of D-tetronitrose.
1. Biochemistry - published July 2, 2010
2. Bruender NA, Thoden JB, Kaur M, Avey MK, Holden HM
Specificity and membrane partitioning of Grsp1 signaling complexes with Grp1 family Arf exchange factors.
1. Biochemistry - published July 2, 2010
2. DiNitto JP, Lee MT, Malaby AW, Lambright DG
Structural insights into the exquisite selectivity of neurexin/neuroligin synaptic interactions.
1. EMBO J - published July 2, 2010
2. Leone P, Comoletti D, Ferracci G, Conrod S, Garcia SU, Taylor P, Bourne Y, Marchot P
Biochemical and structural characterization of a ureidoglycine aminotransferase in the Klebsiella pneumoniae uric acid catabolic pathway.
1. Biochemistry - published July 2, 2010
2. French JB, Ealick SE
Crystal structure of the GalNAc/Gal-specific agglutinin from the phytopathogenic ascomycete Sclerotinia sclerotiorum reveals novel adaptation of a beta-trefoil domain.
1. J Mol Biol - published July 2, 2010
2. Sulzenbacher G, Roig-Zamboni V, Peumans WJ, Rougé P, Van Damme EJ, Bourne Y
Structural effects of oncogenic PI3Kα mutations.
1. Curr Top Microbiol Immunol - published July 2, 2010
2. Gabelli SB, Huang CH, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM
Minor groove orientation of the KWKK peptide tethered via the N-terminal amine to the acrolein-derived 1,N2-gamma-hydroxypropanodeoxyguanosine lesion with a trimethylene linkage.
1. Biochemistry - published July 2, 2010
2. Huang H, Kozekov ID, Kozekova A, Rizzo CJ, McCullough AK, Lloyd RS, Stone MP
Detailed structural and assembly model of the type II secretion pilus from sparse data.
1. Proc Natl Acad Sci U S A - published July 2, 2010
2. Campos M, Nilges M, Cisneros DA, Francetic O
Structural organization of the functional domains of Clostridium difficile toxins A and B.
1. Proc Natl Acad Sci U S A - published July 2, 2010
2. Pruitt RN, Chambers MG, Ng KK, Ohi MD, Lacy DB
Analysis of kinetic intermediates in single-particle dwell-time distributions.
1. Biophys J - published July 2, 2010
2. Floyd DL, Harrison SC, van Oijen AM
Enhanced SnapShot: Pore-forming toxins.
1. Cell - published July 2, 2010
2. Mueller M, Ban N
RNA virus replication complexes.
1. PLoS Pathog - published July 2, 2010
2. Tao YJ, Ye Q
Structural and biochemical characterization of the human cyclophilin family of peptidyl-prolyl isomerases.
1. PLoS Biol - published July 2, 2010
2. Davis TL, Walker JR, Campagna-Slater V, Finerty PJ, Paramanathan R, Bernstein G, MacKenzie F, Tempel W, Ouyang H, Lee WH, Eisenmesser EZ, Dhe-Paganon S
Design and Synthesis of Functionalized Trisaccharides as p53-Peptide Mimics.
1. Tetrahedron Lett - published July 2, 2010
2. Sakurai K, Kahne D
Selective Incision of the alpha-N-Methyl-Formamidopyrimidine Anomer by Escherichia coli Endonuclease IV.
1. J Nucleic Acids - published July 2, 2010
2. Christov PP, Banerjee S, Stone MP, Rizzo CJ
Constructs of human neuropathy target esterase catalytic domain containing mutations related to motor neuron disease have altered enzymatic properties.
1. Toxicol Lett - published July 1, 2010
2. Hein ND, Stuckey JA, Rainier SR, Fink JK, Richardson RJ
Functional and structural analysis of a key region of the cell wall inhibitor moenomycin.
1. ACS Chem Biol - published July 1, 2010
2. Fuse S, Tsukamoto H, Yuan Y, Wang TS, Zhang Y, Bolla M, Walker S, Sliz P, Kahne D
Automated electron-density sampling reveals widespread conformational polymorphism in proteins.
1. Protein Sci - published July 1, 2010
2. Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton JM, Alber T
Prediction of protease substrates using sequence and structure features.
1. Bioinformatics - published July 1, 2010
2. Barkan DT, Hostetter DR, Mahrus S, Pieper U, Wells JA, Craik CS, Sali A
Fragile X mental retardation protein controls gating of the sodium-activated potassium channel Slack.
1. Nat Neurosci - published July 1, 2010
2. Brown MR, Kronengold J, Gazula VR, Chen Y, Strumbos JG, Sigworth FJ, Navaratnam D, Kaczmarek LK
Dissecting variability in responses to cancer chemotherapy through systems pharmacology.
1. Clin Pharmacol Ther - published July 1, 2010
2. Yang R, Niepel M, Mitchison TK, Sorger PK
T-cell signaling regulated by the Tec family kinase, Itk.
1. Cold Spring Harb Perspect Biol - published July 1, 2010
2. Andreotti AH, Schwartzberg PL, Joseph RE, Berg LJ
Cutting edge: FcR-like 5 on innate B cells is targeted by a poxvirus MHC class I-like immunoevasin.
1. J Immunol - published July 1, 2010
2. Campbell JA, Davis RS, Lilly LM, Fremont DH, French AR, Carayannopoulos LN
Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs.
1. Nat Struct Mol Biol - published July 1, 2010
2. Dominguez C, Fisette JF, Chabot B, Allain FH
PUDGE: a flexible, interactive server for protein structure prediction.
1. Nucleic Acids Res - published July 1, 2010
2. Norel R, Petrey D, Honig B
Pseudovirion particles bearing native HIV envelope trimers facilitate a novel method for generating human neutralizing monoclonal antibodies against HIV.
1. J Acquir Immune Defic Syndr - published July 1, 2010
2. Hicar MD, Chen X, Briney B, Hammonds J, Wang JJ, Kalams S, Spearman PW, Crowe JE Jr
Observation of a chemically labile, noncovalent enzyme intermediate in the reaction of metal-dependent Aquifex pyrophilus KDO8PS by time-resolved mass spectrometry.
1. Rapid Commun Mass Spectrom - published July 1, 2010
2. Roberts A, Furdui C, Anderson KS
Reconstitution of Helicobacter pylori VacA toxin from purified components.
1. Biochemistry - published July 1, 2010
2. González-Rivera C, Gangwer KA, McClain MS, Eli IM, Chambers MG, Ohi MD, Lacy DB, Cover TL
Clickable NAD analogues for labeling substrate proteins of poly(ADP-ribose) polymerases.
1. J Am Chem Soc - published July 1, 2010
2. Jiang H, Kim JH, Frizzell KM, Kraus WL, Lin H
Structures of DNA polymerases caught processing size-augmented nucleotide probes.
1. Angew Chem Int Ed Engl - published July 1, 2010
2. Betz K, Streckenbach F, Schnur A, Exner T, Welte W, Diederichs K, Marx A
Structure of the gating ring from the human large-conductance Ca(2+)-gated K(+) channel.
1. Nature - published July 1, 2010
2. Wu Y, Yang Y, Ye S, Jiang Y
DNA cross-link induced by trans-4-hydroxynonenal.
1. Environ Mol Mutagen - published July 1, 2010
2. Huang H, Kozekov ID, Kozekova A, Wang H, Lloyd RS, Rizzo CJ, Stone MP
Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I.
1. Nat Struct Mol Biol - published July 1, 2010
2. Wang Y, Ludwig J, Schuberth C, Goldeck M, Schlee M, Li H, Juranek S, Sheng G, Micura R, Tuschl T, Hartmann G, Patel DJ
HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues.
1. Nat Struct Mol Biol - published July 1, 2010
2. Krojer T, Sawa J, Huber R, Clausen T
An allosteric inhibitor of substrate recognition by the SCF(Cdc4) ubiquitin ligase.
1. Nat Biotechnol - published July 1, 2010
2. Orlicky S, Tang X, Neduva V, Elowe N, Brown ED, Sicheri F, Tyers M
A dimeric form of the HIV-1 antibody 2G12 elicits potent antibody-dependent cellular cytotoxicity.
1. AIDS - published July 1, 2010
2. Klein JS, Webster A, Gnanapragasam PN, Galimidi RP, Bjorkman PJ
Crystal structure of the conserved herpesvirus fusion regulator complex gH-gL.
1. Nat Struct Mol Biol - published July 1, 2010
2. Chowdary TK, Cairns TM, Atanasiu D, Cohen GH, Eisenberg RJ, Heldwein EE
Crystallization and preliminary X-ray analysis of the chemokine-binding protein from orf virus (Poxviridae).
1. Acta Crystallogr Sect F Struct Biol Cryst Commun - published July 1, 2010
2. Couñago RM, Fleming SB, Mercer AA, Krause KL
Crystallization and preliminary X-ray analysis of a phosphopentomutase from Bacillus cereus.
1. Acta Crystallogr Sect F Struct Biol Cryst Commun - published July 1, 2010
2. Panosian TD, Nannemann DP, Bachmann BO, Iverson TM
HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes.
1. Proc Natl Acad Sci U S A - published July 1, 2010
2. Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD
Splice form dependence of beta-neurexin/neuroligin binding interactions.
1. Neuron - published July 1, 2010
2. Koehnke J, Katsamba PS, Ahlsen G, Bahna F, Vendome J, Honig B, Shapiro L, Jin X
Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection.
1. Mol Syst Biol - published July 1, 2010
2. Peña MI, Davlieva M, Bennett MR, Olson JS, Shamoo Y
Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer.
1. Structure - published July 1, 2010
2. Dalmas O, Cuello LG, Jogini V, Cortes DM, Roux B, Perozo E
A research-inspired laboratory sequence investigating acquired drug resistance.
1. Biochem Mol Biol Educ - published July 1, 2010
2. Taylor EV, Fortune JA, Drennan CL