Member Publications

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56 Member Publications for April 2010

The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias.
1. J Biol Chem - published April 9, 2010
2. Taylor SD, Solem A, Kawaoka J, Pyle AM
MutLalpha and proliferating cell nuclear antigen share binding sites on MutSbeta.
1. J Biol Chem - published April 9, 2010
2. Iyer RR, Pluciennik A, Genschel J, Tsai MS, Beese LS, Modrich P
Bacterial nitric oxide synthases.
1. Annu Rev Biochem - published April 8, 2010
2. Crane BR, Sudhamsu J, Patel BA
Peptide inhibitors of dengue-virus entry target a late-stage fusion intermediate.
1. PLoS Pathog - published April 8, 2010
2. Schmidt AG, Yang PL, Harrison SC
Structural dynamics and single-stranded DNA binding activity of the three N-terminal domains of the large subunit of replication protein A from small angle X-ray scattering.
1. Biochemistry - published April 6, 2010
2. Pretto DI, Tsutakawa S, Brosey CA, Castillo A, Chagot ME, Smith JA, Tainer JA, Chazin WJ
Synthesis of highly substituted cyclobutane fused-ring systems from N-vinyl beta-lactams through a one-pot domino process.
1. Chemistry - published April 6, 2010
2. Cheung LL, Yudin AK
Crystal structure of PsbQ from Synechocystis sp. PCC 6803 at 1.8 A: implications for binding and function in cyanobacterial photosystem II.
1. Biochemistry - published April 6, 2010
2. Jackson SA, Fagerlund RD, Wilbanks SM, Eaton-Rye JJ
Subunit interactions in bovine papillomavirus.
1. Proc Natl Acad Sci U S A - published April 6, 2010
2. Wolf M, Garcea RL, Grigorieff N, Harrison SC
Stabilization of VEGFR2 signaling by cerebral cavernous malformation 3 is critical for vascular development.
1. Sci Signal - published April 6, 2010
2. He Y, Zhang H, Yu L, Gunel M, Boggon TJ, Chen H, Min W
Direct ubiquitination of beta-catenin by Siah-1 and regulation by the exchange factor TBL1.
1. J Biol Chem - published April 3, 2010
2. Dimitrova YN, Li J, Lee YT, Rios-Esteves J, Friedman DB, Choi HJ, Weis WI, Wang CY, Chazin WJ
The importin beta binding domain modulates the avidity of importin beta for the nuclear pore complex.
1. J Biol Chem - published April 3, 2010
2. Lott K, Bhardwaj A, Mitrousis G, Pante N, Cingolani G
Building and refining protein models within cryo-electron microscopy density maps based on homology modeling and multiscale structure refinement.
1. J Mol Biol - published April 2, 2010
2. Zhu J, Cheng L, Fang Q, Zhou ZH, Honig B
Engineering novel complement activity into a pulmonary surfactant protein.
1. J Biol Chem - published April 2, 2010
2. Venkatraman Girija U, Furze C, Toth J, Schwaeble WJ, Mitchell DA, Keeble AH, Wallis R
Protein-facilitated folding of group II intron ribozymes.
1. J Mol Biol - published April 2, 2010
2. Fedorova O, Solem A, Pyle AM
Protein vivisection reveals elusive intermediates in folding.
1. J Mol Biol - published April 2, 2010
2. Zheng Z, Sosnick TR
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate.
1. J Am Chem Soc - published April 2, 2010
2. Sutter M, Damberger FF, Imkamp F, Allain FH, Weber-Ban E
A gating charge transfer center in voltage sensors.
1. Science - published April 2, 2010
2. Tao X, Lee A, Limapichat W, Dougherty DA, MacKinnon R
Glycal formation in crystals of uridine phosphorylase.
1. Biochemistry - published April 2, 2010
2. Paul D, O'Leary SE, Rajashankar K, Bu W, Toms A, Settembre EC, Sanders JM, Begley TP, Ealick SE
Catalysis of a flavoenzyme-mediated amide hydrolysis.
1. J Am Chem Soc - published April 2, 2010
2. Mukherjee T, Zhang Y, Abdelwahed S, Ealick SE, Begley TP
Structural basis of HIV-1 tethering to membranes by the BST-2/tetherin ectodomain.
1. Cell Host Microbe - published April 2, 2010
2. Hinz A, Miguet N, Natrajan G, Usami Y, Yamanaka H, Renesto P, Hartlieb B, McCarthy AA, Simorre JP, Göttlinger H, Weissenhorn W
Ligand binding and crystal structures of the substrate-binding domain of the ABC transporter OpuA.
1. PLoS One - published April 2, 2010
2. Wolters JC, Berntsson RP, Gul N, Karasawa A, Thunnissen AM, Slotboom DJ, Poolman B
Structural basis of competition between PINCH1 and PINCH2 for binding to the ankyrin repeat domain of integrin-linked kinase.
1. J Struct Biol - published April 1, 2010
2. Chiswell BP, Stiegler AL, Razinia Z, Nalibotski E, Boggon TJ, Calderwood DA
Resonance assignment and secondary structure of the middle MA-3 domain and complete tandem MA-3 region of the tumour suppressor protein Pdcd4.
1. Biomol NMR Assign - published April 1, 2010
2. Waters LC, Oka O, Muskett FW, Strong SL, Schmedt T, Klempnauer KH, Carr MD
The N-terminus of hTERT contains a DNA-binding domain and is required for telomerase activity and cellular immortalization.
1. Nucleic Acids Res - published April 1, 2010
2. Sealey DC, Zheng L, Taboski MA, Cruickshank J, Ikura M, Harrington LA
Establishing a role for the GTPase Ypt1p at the late Golgi.
1. Traffic - published April 1, 2010
2. Sclafani A, Chen S, Rivera-Molina F, Reinisch K, Novick P, Ferro-Novick S
Heterologous quaternary structure of CXCL12 and its relationship to the CC chemokine family.
1. Proteins - published April 1, 2010
2. Murphy JW, Yuan H, Kong Y, Xiong Y, Lolis EJ
Automated multi-model reconstruction from single-particle electron microscopy data.
1. J Struct Biol - published April 1, 2010
2. Shatsky M, Hall RJ, Nogales E, Malik J, Brenner SE
A V3 loop-dependent gp120 element disrupted by CD4 binding stabilizes the human immunodeficiency virus envelope glycoprotein trimer.
1. J Virol - published April 1, 2010
2. Xiang SH, Finzi A, Pacheco B, Alexander K, Yuan W, Rizzuto C, Huang CC, Kwong PD, Sodroski J
The robustness of pollination networks to the loss of species and interactions: a quantitative approach incorporating pollinator behaviour.
1. Ecol Lett - published April 1, 2010
2. Kaiser-Bunbury CN, Muff S, Memmott J, Müller CB, Caflisch A
Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence factor.
1. J Bacteriol - published April 1, 2010
2. Bahl CD, Morisseau C, Bomberger JM, Stanton BA, Hammock BD, O'Toole GA, Madden DR
Virulence plasmid harbored by uropathogenic Escherichia coli functions in acute stages of pathogenesis.
1. Infect Immun - published April 1, 2010
2. Cusumano CK, Hung CS, Chen SL, Hultgren SJ
Species-specific inhibition of foamy viruses from South American monkeys by New World Monkey TRIM5{alpha} proteins.
1. J Virol - published April 1, 2010
2. Pacheco B, Finzi A, McGee-Estrada K, Sodroski J
Computational analysis of off-rate selection experiments to optimize affinity maturation by directed evolution.
1. Protein Eng Des Sel - published April 1, 2010
2. Zahnd C, Sarkar CA, Plückthun A
Epigenetic mechanisms regulate stage differentiation in the minimized protozoan Giardia lamblia.
1. Mol Microbiol - published April 1, 2010
2. Sonda S, Morf L, Bottova I, Baetschmann H, Rehrauer H, Caflisch A, Hakimi MA, Hehl AB
A reported archaeal mechanosensitive channel is a structural homolog of MarR-like transcriptional regulators.
1. Protein Sci - published April 1, 2010
2. Liu Z, Walton TA, Rees DC
Structural insights into the molecular mechanism of H-NOX activation.
1. Protein Sci - published April 1, 2010
2. Olea C Jr, Herzik MA Jr, Kuriyan J, Marletta MA
Phylogenetic analysis of bovine leukemia viruses isolated in South America reveals diversification in seven distinct genotypes.
1. Arch Virol - published April 1, 2010
2. Moratorio G, Obal G, Dubra A, Correa A, Bianchi S, Buschiazzo A, Cristina J, Pritsch O
Analysis of an engineered plasma kallikrein inhibitor and its effect on contact activation.
1. Biol Chem - published April 1, 2010
2. Stoop AA, Joshi RV, Eggers CT, Craik CS
Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24.
1. RNA - published April 1, 2010
2. Martin-Tumasz S, Reiter NJ, Brow DA, Butcher SE
Molecular transformers in the cell: lessons learned from the DegP protease-chaperone.
1. Curr Opin Struct Biol - published April 1, 2010
2. Sawa J, Heuck A, Ehrmann M, Clausen T
Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.
1. J Mol Biol - published April 1, 2010
2. Baird NJ, Gong H, Zaheer SS, Freed KF, Pan T, Sosnick TR
Structural basis for receptor recognition by New World hemorrhagic fever arenaviruses.
1. Nat Struct Mol Biol - published April 1, 2010
2. Abraham J, Corbett KD, Farzan M, Choe H, Harrison SC
Conformational rearrangements of SV40 large T antigen during early replication events.
1. J Mol Biol - published April 1, 2010
2. Cuesta I, Núñez-Ramírez R, Scheres SH, Gai D, Chen XS, Fanning E, Carazo JM
Biochemical characterization of ThiT from Lactococcus lactis: a thiamin transporter with picomolar substrate binding affinity.
1. Biochemistry - published April 1, 2010
2. Erkens GB, Slotboom DJ
Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown.
1. FEBS Lett - published April 1, 2010
2. Vincent F, Molin DD, Weiner RM, Bourne Y, Henrissat B
Disrupting the intermolecular self-association of Itk enhances T cell signaling.
1. J Immunol - published April 1, 2010
2. Min L, Wu W, Joseph RE, Fulton DB, Berg L, Andreotti AH
Practically useful: what the Rosetta protein modeling suite can do for you.
1. Biochemistry - published April 1, 2010
2. Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J
Orchestrating serine resolvases.
1. Biochem Soc Trans - published April 1, 2010
2. Rice PA, Mouw KW, Montaño SP, Boocock MR, Rowland SJ, Stark WM
Eastern extension of azoles as non-nucleoside inhibitors of HIV-1 reverse transcriptase; cyano group alternatives.
1. Bioorg Med Chem Lett - published April 1, 2010
2. Leung CS, Zeevaart JG, Domaoal RA, Bollini M, Thakur VV, Spasov KA, Anderson KS, Jorgensen WL
Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
1. Proc Natl Acad Sci U S A - published April 1, 2010
2. Tanabe M, Nimigean CM, Iverson TM
The development of therapeutic antibodies that neutralize homologous and heterologous genotypes of dengue virus type 1.
1. PLoS Pathog - published April 1, 2010
2. Shrestha B, Brien JD, Sukupolvi-Petty S, Austin SK, Edeling MA, Kim T, O'Brien KM, Nelson CA, Johnson S, Fremont DH, Diamond MS
Diffraction data analysis in the presence of radiation damage.
1. Acta Crystallogr D Biol Crystallogr - published April 1, 2010
2. Borek D, Cymborowski M, Machius M, Minor W, Otwinowski Z
Structural determinants of cadherin-23 function in hearing and deafness.
1. Neuron - published April 1, 2010
2. Sotomayor M, Weihofen WA, Gaudet R, Corey DP
Partial unfolding and oligomerization of stromal interaction molecules as an initiation mechanism of store operated calcium entry.
1. Biochem Cell Biol - published April 1, 2010
2. Stathopulos PB, Ikura M
Decomposing the energetic impact of drug resistant mutations in HIV-1 protease on binding DRV.
1. J Chem Theory Comput - published April 1, 2010
2. Cai Y, Schiffer CA
CLASSIFICATION BY BOOTSTRAPPING IN SINGLE PARTICLE METHODS.
1. Proc IEEE Int Symp Biomed Imaging - published April 1, 2010
2. Liao HY, Frank J