Member Publications

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48 Member Publications for August 2009

A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system.
1. Mol Syst Biol - published August 20, 2009
2. van Wijk SJ, de Vries SJ, Kemmeren P, Huang A, Boelens R, Bonvin AM, Timmers HT
SH2-dependent autophosphorylation within the Tec family kinase Itk.
1. J Mol Biol - published August 7, 2009
2. Joseph RE, Severin A, Min L, Fulton DB, Andreotti AH
A class of dynamin-like GTPases involved in the generation of the tubular ER network.
1. Cell - published August 7, 2009
2. Hu J, Shibata Y, Zhu PP, Voss C, Rismanchi N, Prinz WA, Rapoport TA, Blackstone C
The selectivity of receptor tyrosine kinase signaling is controlled by a secondary SH2 domain binding site.
1. Cell - published August 7, 2009
2. Bae JH, Lew ED, Yuzawa S, Tomé F, Lax I, Schlessinger J
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.
1. EMBO J - published August 5, 2009
2. Clerici M, Mourão A, Gutsche I, Gehring NH, Hentze MW, Kulozik A, Kadlec J, Sattler M, Cusack S
Structural and functional analysis of Sulfolobus solfataricus Y-family DNA polymerase Dpo4-catalyzed bypass of the malondialdehyde-deoxyguanosine adduct.
1. Biochemistry - published August 4, 2009
2. Eoff RL, Stafford JB, Szekely J, Rizzo CJ, Egli M, Guengerich FP, Marnett LJ
NMR and computational studies of stereoisomeric equine estrogen-derived DNA cytidine adducts in oligonucleotide duplexes: opposite orientations of diastereomeric forms.
1. Biochemistry - published August 4, 2009
2. Zhang N, Ding S, Kolbanovskiy A, Shastry A, Kuzmin VA, Bolton JL, Patel DJ, Broyde S, Geacintov NE
Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding.
1. Proc Natl Acad Sci U S A - published August 4, 2009
2. Guu TS, Liu Z, Ye Q, Mata DA, Li K, Yin C, Zhang J, Tao YJ
Basal lamina strengthens cell membrane integrity via the laminin G domain-binding motif of alpha-dystroglycan.
1. Proc Natl Acad Sci U S A - published August 4, 2009
2. Han R, Kanagawa M, Yoshida-Moriguchi T, Rader EP, Ng RA, Michele DE, Muirhead DE, Kunz S, Moore SA, Iannaccone ST, Miyake K, McNeil PL, Mayer U, Oldstone MB, Faulkner JA, Campbell KP
Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme.
1. J Mol Biol - published August 2, 2009
2. Wu J, Bu W, Sheppard K, Kitabatake M, Kwon ST, Söll D, Smith JL
New insights into how the Rho guanine nucleotide dissociation inhibitor regulates the interaction of Cdc42 with membranes.
1. J Biol Chem - published August 2, 2009
2. Johnson JL, Erickson JW, Cerione RA
Crystal structures of the reduced, sulfenic acid, and mixed disulfide forms of SarZ, a redox active global regulator in Staphylococcus aureus.
1. J Biol Chem - published August 2, 2009
2. Poor CB, Chen PR, Duguid E, Rice PA, He C
Optimized surgical techniques and postoperative care improve survival rates and permit accurate telemetric recording in exercising mice.
1. BMC Vet Res - published August 2, 2009
2. Schuler B, Rettich A, Vogel J, Gassmann M, Arras M
Biochemical and structural characterization of alanine racemase from Bacillus anthracis (Ames).
1. BMC Struct Biol - published August 2, 2009
2. Couñago RM, Davlieva M, Strych U, Hill RE, Krause KL
Effects of S1 cleavage on the structure, surface export, and signaling activity of human Notch1 and Notch2.
1. PLoS One - published August 2, 2009
2. Gordon WR, Vardar-Ulu D, L'Heureux S, Ashworth T, Malecki MJ, Sanchez-Irizarry C, McArthur DG, Histen G, Mitchell JL, Aster JC, Blacklow SC
X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.
1. Proteins - published August 1, 2009
2. Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr
Formation of the RFX gene regulatory complex induces folding of the interaction domain of RFXAP.
1. Proteins - published August 1, 2009
2. Briggs L, Laird K, Boss JM, Garvie CW
Mass-spectrometric characterization of two posttranslational modifications of cysteine dioxygenase.
1. J Biol Inorg Chem - published August 1, 2009
2. Kleffmann T, Jongkees SA, Fairweather G, Wilbanks SM, Jameson GN
Targeting CpG DNA to screen and isolate anti-sepsis fraction and monomers from traditional Chinese herbs using affinity biosensor technology.
1. Int Immunopharmacol - published August 1, 2009
2. Liu X, Cheng J, Zheng X, Chen Y, Wu C, Li B, Fu J, Cao H, Lu Y, Li J, Zheng J, Zhou H
Ab initio reconstruction of helical samples with heterogeneity, disorder and coexisting symmetries.
1. J Struct Biol - published August 1, 2009
2. Ramey VH, Wang HW, Nogales E
Discovery of plasmepsin inhibitors by fragment-based docking and consensus scoring.
1. ChemMedChem - published August 1, 2009
2. Friedman R, Caflisch A
Structural basis of Ist1 function and Ist1-Did2 interaction in the multivesicular body pathway and cytokinesis.
1. Mol Biol Cell - published August 1, 2009
2. Xiao J, Chen XW, Davies BA, Saltiel AR, Katzmann DJ, Xu Z
Cisternal organization of the endoplasmic reticulum during mitosis.
1. Mol Biol Cell - published August 1, 2009
2. Lu L, Ladinsky MS, Kirchhausen T
Ligand binding and substrate discrimination by UDP-galactopyranose mutase.
1. J Mol Biol - published August 1, 2009
2. Gruber TD, Borrok MJ, Westler WM, Forest KT, Kiessling LL
Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators.
1. J Mol Biol - published August 1, 2009
2. Mooney RA, Schweimer K, Rösch P, Gottesman M, Landick R
Crystallographic and biochemical analysis of the Ran-binding zinc finger domain.
1. J Mol Biol - published August 1, 2009
2. Partridge JR, Schwartz TU
Nuclear pore complex biogenesis.
1. Curr Opin Cell Biol - published August 1, 2009
2. Fernandez-Martinez J, Rout MP
Structural and functional elucidation of the mechanism promoting error-prone synthesis by human DNA polymerase kappa opposite the 7,8-dihydro-8-oxo-2'-deoxyguanosine adduct.
1. J Biol Chem - published August 1, 2009
2. Irimia A, Eoff RL, Guengerich FP, Egli M
Characterization of a trimeric MPER containing HIV-1 gp41 antigen.
1. Virology - published August 1, 2009
2. Hinz A, Schoehn G, Quendler H, Hulsik DL, Stiegler G, Katinger H, Seaman MS, Montefiori D, Weissenhorn W
Discovery and structural analysis of Eph receptor tyrosine kinase inhibitors.
1. Bioorg Med Chem Lett - published August 1, 2009
2. Choi Y, Syeda F, Walker JR, Finerty PJ Jr, Cuerrier D, Wojciechowski A, Liu Q, Dhe-Paganon S, Gray NS
Structure-function analysis of inositol hexakisphosphate-induced autoprocessing in Clostridium difficile toxin A.
1. J Biol Chem - published August 1, 2009
2. Pruitt RN, Chagot B, Cover M, Chazin WJ, Spiller B, Lacy DB
Flaviviral protease inhibitors identified by fragment-based library docking into a structure generated by molecular dynamics.
1. J Med Chem - published August 1, 2009
2. Ekonomiuk D, Su XC, Ozawa K, Bodenreider C, Lim SP, Otting G, Huang D, Caflisch A
The structure of the scaffold nucleoporin Nup120 reveals a new and unexpected domain architecture.
1. Structure - published August 1, 2009
2. Leksa NC, Brohawn SG, Schwartz TU
Crystallographic snapshots of cyanide- and water-bound C-clusters from bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.
1. Biochemistry - published August 1, 2009
2. Kung Y, Doukov TI, Seravalli J, Ragsdale SW, Drennan CL
Prospective cohort study of microbial and inflammatory events immediately preceding Escherichia coli recurrent urinary tract infection in women.
1. J Infect Dis - published August 1, 2009
2. Czaja CA, Stamm WE, Stapleton AE, Roberts PL, Hawn TR, Scholes D, Samadpour M, Hultgren SJ, Hooton TM
Searching for interesting channels: pairing selection and molecular evolution methods to study ion channel structure and function.
1. Mol Biosyst - published August 1, 2009
2. Minor DL Jr
The pediatric burden of human coronaviruses evaluated for twenty years.
1. Pediatr Infect Dis J - published August 1, 2009
2. Talbot HK, Shepherd BE, Crowe JE Jr, Griffin MR, Edwards KM, Podsiad AB, Tollefson SJ, Wright PF, Williams JV
Surface binding inhibitors of the SCF-KIT protein-protein interaction.
1. Chembiochem - published August 1, 2009
2. Margulies D, Opatowsky Y, Fletcher S, Saraogi I, Tsou LK, Saha S, Lax I, Schlessinger J, Hamilton AD
A murine model of urinary tract infection.
1. Nat Protoc - published August 1, 2009
2. Hung CS, Dodson KW, Hultgren SJ
A prokaryotic perspective on pentameric ligand-gated ion channel structure.
1. Curr Opin Struct Biol - published August 1, 2009
2. Hilf RJ, Dutzler R
Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus.
1. Acta Crystallogr Sect F Struct Biol Cryst Commun - published August 1, 2009
2. Davlieva M, Shamoo Y
A new direction for titin pulling.
1. Proc Natl Acad Sci U S A - published August 1, 2009
2. Rock RS
Structure-function relationships of anaerobic gas-processing metalloenzymes.
1. Nature - published August 1, 2009
2. Fontecilla-Camps JC, Amara P, Cavazza C, Nicolet Y, Volbeda A
Structural recognition of an optimized substrate for the ephrin family of receptor tyrosine kinases.
1. FEBS J - published August 1, 2009
2. Davis TL, Walker JR, Allali-Hassani A, Parker SA, Turk BE, Dhe-Paganon S
Lipopeptide detergents for membrane protein studies.
1. Curr Opin Struct Biol - published August 1, 2009
2. Privé GG
Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu.
1. Q Rev Biophys - published August 1, 2009
2. Agirrezabala X, Frank J
Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.
1. Q Rev Biophys - published August 1, 2009
2. Frank J
Tannous et al. Respond.
1. Mol Ther - published August 1, 2009
2. Tannous BA, Chiocca EA, Jacobs AH, Corey DP, Breakefield XO