Installing SBGrid Software
Using the SBGrid Environment
Support for Site Administrators
Hardware Support Notes
Getting Help
Support for Developers
Actual packages installed by site vary depending on licensing and requests. Packages can be removed on request.
303.9G x86_64-linux [++++++++++++++++++++++++++++++++++++++++++++++++++++]
214.9G i386-mac [++++++++++++++++++++++++++++++++++++ ]
9.6G share [+ ] 30.6G rosetta [+++++++++++++++++++++++++++++++++++]
27.4G schrodinger [+++++++++++++++++++++++++++++++ ]
15.3G eman2 [+++++++++++++++++ ]
15.1G phenix [+++++++++++++++++ ]
14.2G pyrosetta [++++++++++++++++ ]
10.1G pomona [+++++++++++ ]
9.8G ccp4 [+++++++++++ ]
9.4G raw [++++++++++ ]
9.2G anaconda [++++++++++ ]
8.4G scipion [+++++++++ ]
7.0G ambertools [+++++++ ]
6.7G acemd [+++++++ ]
6.3G coot [+++++++ ]
6.3G spider [+++++++ ]
5.1G ilastik [+++++ ]
4.4G peet [+++++ ]
4.2G texlive [++++ ]
4.1G nmrpipe [++++ ]
3.8G divcon [++++ ]
3.6G cuda [++++ ]
3.5G molprobity [++++ ]
3.4G dials [+++ ]
3.2G xplor [+++ ]
3.2G shapemapper2 [+++ ]
3.0G ccp4mg [+++ ]
2.9G sphire [+++ ]
2.8G python [+++ ]
2.8G spring [+++ ]
2.6G dynamo [++ ]
2.5G xmipp [++ ]
2.3G mageckvispr [++ ]
2.2G pymol [++ ]
2.1G rstudio [++ ]
2.1G system [++ ]
2.0G cp2k [++ ]
2.0G atsas [++ ]
1.9G relion [++ ]
1.8G r [++ ]
1.7G chimerax [+ ]
1.7G qt [+ ]
1.5G chimera [+ ]
1.5G ccpnmr [+ ]
1.4G bsoft [+ ]
1.4G geneious [+ ]
1.2G gromacs [+ ]
1.2G blastplus [+ ]
1.1G csrosetta [+ ]
1.1G java [+ ]
1.1G imp [+ ]
1.1G iplt [+ ]
1.0G cns [+ ]
998.6M haddock [+ ]
988.6M cistem [+ ]
925.6M nmrfx-processor [+ ]
911.4M arp_warp [+ ]
826.3M shiftx2 [ ]
819.2M emboss [ ]
813.9M nmrfam-sparky [ ]
807.6M em2em [ ]
783.1M mgltools [ ]
778.7M powerfit [ ]
770.3M frealign [ ]
719.1M whatif [ ]
717.9M rcsbtools [ ]
716.8M vtk [ ]
709.9M dock [ ]
704.3M gctf [ ]
702.1M imagic [ ]
641.5M buster [ ]
614.3M mgltools2 [ ]
612.8M whatcheck [ ]
575.7M vlion [ ]
569.7M icmbrowser [ ]
560.7M mono [ ]
560.3M fiji [ ]
543.4M imod [ ]
541.8M autoproc [ ]
531.4M shelx-2013 [ ]
523.9M hkl [ ]
489.7M relax [ ]
477.0M focus [ ]
472.7M caver [ ]
442.1M balbes [ ]
427.7M mrc [ ]
421.5M bowtie2 [ ]
416.9M ultrascan3 [ ]
401.7M talosn [ ]
387.0M pdb_redo [ ]
376.8M namd [ ]
374.6M dtrek_free [ ]
367.2M vmd [ ]
355.5M imagemagick [ ]
352.1M motioncorr [ ]
345.9M modeller [ ]
333.2M 2dx [ ]
331.3M 3dna [ ]
324.9M locscale [ ]
313.6M gorgon [ ]
304.5M plumed [ ]
299.6M imagej [ ]
298.2M perl [ ]
274.4M openmpi [ ]
257.6M albula [ ]
256.9M crystfel [ ]
255.5M gerelion [ ]
251.1M simple [ ]
243.7M arcimboldo_lite [ ]
235.0M lafire [ ]
219.0M mifit [ ]
215.6M apbs [ ]
210.9M openbabel [ ]
206.8M solve [ ]
205.2M gnuplot [ ]
204.0M cryoemtools [ ]
202.2M pymol_open [ ]
192.6M shelx [ ]
190.4M unio [ ]
188.6M caver_analyst [ ]
186.5M avogadro [ ]
183.8M theseus [ ]
180.7M sratoolkit [ ]
179.5M norma [ ]
179.4M blast [ ]
170.0M priism [ ]
167.5M openmm [ ]
162.8M specview [ ]
157.6M infernal [ ]
153.6M imod_nma [ ]
153.3M tigris [ ]
147.8M samtools [ ]
144.8M tcltk [ ]
139.8M frodock [ ]
134.9M pytom [ ]
131.7M aria [ ]
131.0M spire [ ]
129.0M sharp [ ]
127.2M fuda [ ]
119.2M ctffind4 [ ]
118.7M gautomatch [ ]
106.4M gamma [ ]
102.3M breseq [ ]
100.3M imodfit [ ]
99.6M bcftools [ ]
97.4M prospect [ ]
96.7M jalview [ ]
94.6M wxpython [ ]
91.2M mafft [ ]
89.6M igv [ ]
89.6M urox [ ]
86.8M emip [ ]
86.8M plip [ ]
83.4M cara [ ]
79.5M tcoffee [ ]
79.1M sparky [ ]
77.6M xds [ ]
77.3M vmd-xplor [ ]
72.3M scatter [ ]
69.7M ghostscript [ ]
69.5M xdsgui [ ]
68.5M suprim [ ]
67.0M protomo [ ]
66.8M globus_connect_personal [ ]
66.7M rsref [ ]
66.0M eman [ ]
61.5M imosflm [ ]
58.1M vinalc [ ]
56.7M pdb2pqr [ ]
55.7M como [ ]
55.5M gefrealign [ ]
54.1M auto3dem [ ]
49.7M sculptor [ ]
49.4M fasta [ ]
48.3M mag_distortion [ ]
47.5M bnp [ ]
47.4M dps [ ]
46.4M unblur [ ]
46.2M hole [ ]
45.6M ultrascan [ ]
45.4M saxsview [ ]
44.0M mmtsb [ ]
43.7M mosflm [ ]
42.1M ruby [ ]
42.1M gerard [ ]
41.7M resmap [ ]
40.3M refmac [ ]
40.0M nmrview [ ]
39.5M staden [ ]
35.8M mead [ ]
34.1M graphviz [ ]
33.8M xdrawchem [ ]
33.0M appion [ ]
30.7M stamp [ ]
30.3M pymmlib [ ]
29.9M profphd [ ]
29.5M fpocket [ ]
29.5M eden [ ]
29.2M ringer [ ]
28.5M pdb_extract [ ]
28.3M procheck [ ]
27.9M sam [ ]
27.2M phases [ ]
26.5M scwrl3 [ ]
26.1M summovie [ ]
25.6M miso [ ]
25.0M rasmol [ ]
24.7M xdsme [ ]
23.2M ihrsr [ ]
22.9M xrayview [ ]
22.8M simulaid [ ]
22.6M eiger2cbf [ ]
22.1M r2r [ ]
21.7M nessy [ ]
21.6M finddqe [ ]
21.6M zephyr [ ]
21.5M snb [ ]
21.4M scwrl4 [ ]
21.3M gwyddion [ ]
20.7M grace [ ]
20.1M wattos [ ]
20.1M rdock [ ]
20.1M mpich [ ]
19.7M bbhp [ ]
19.3M concoord [ ]
18.2M clustal [ ]
18.2M rsref2000 [ ]
17.7M escet [ ]
17.6M phylip [ ]
17.4M cmview [ ]
17.4M adxv [ ]
17.3M motioncor2 [ ]
17.2M replace [ ]
17.2M ctf [ ]
17.1M direx [ ]
17.0M mole [ ]
16.5M redcat [ ]
16.4M sbgrid_installer [ ]
16.3M remediator [ ]
16.2M molmol [ ]
16.0M mrtailor [ ]
15.5M dssp [ ]
15.3M ligplus [ ]
15.2M knuspr [ ]
15.0M main [ ]
14.2M promals [ ]
14.1M xeasy [ ]
13.4M assemble2 [ ]
13.4M o [ ]
13.2M rnamlview [ ]
12.7M povray [ ]
12.7M mcce [ ]
12.5M pft3dr [ ]
11.9M phoelix [ ]
11.6M modelfree [ ]
11.5M situs [ ]
11.4M tensor [ ]
11.4M particle [ ]
11.4M finchtv [ ]
11.0M smina [ ]
10.7M frealix [ ]
10.5M hydropro [ ]
10.5M dyndom3d [ ]
10.0M x3d [ ]
9.9M espript [ ]
9.9M raster3d [ ]
9.3M embfactor [ ]
9.3M entangle [ ]
9.2M bioptools [ ]
9.0M netblast [ ]
8.8M isthms [ ]
8.5M amps [ ]
8.5M epmr [ ]
8.4M rnastructure [ ]
7.9M elves [ ]
7.3M spdbv [ ]
7.0M module [ ]
6.8M electra [ ]
6.2M pgplot [ ]
6.0M a2ps [ ]
5.9M aqua [ ]
5.6M xv [ ]
5.6M nucplot [ ]
5.6M somore [ ]
5.2M delphi [ ]
5.2M xdsapp [ ]
5.0M veda [ ]
4.6M plotutils [ ]
4.4M weblogo [ ]
4.3M curvesplus [ ]
4.2M xdsi [ ]
4.2M dino [ ]
4.2M timescapes [ ]
4.1M zdock [ ]
4.0M vina [ ]
3.8M solvate [ ]
3.7M neggia [ ]
3.6M nedit [ ]
3.6M ace2 [ ]
3.6M xdsstat [ ]
3.5M aline [ ]
3.4M dssr [ ]
3.3M ssaha2 [ ]
3.3M mmc [ ]
3.2M h5toxds [ ]
3.2M dyndom [ ]
3.2M xdscc12 [ ]
3.1M scc [ ]
3.1M pdbstat [ ]
3.1M superfold [ ]
2.7M qushape [ ]
2.6M signature [ ]
2.5M alscript [ ]
2.5M mammoth-mult [ ]
2.5M primer3 [ ]
2.4M tiltpicker [ ]
2.1M dogpicker [ ]
2.1M bfactor [ ]
2.0M hbplus [ ]
2.0M surfv [ ]
2.0M plotmtv [ ]
2.0M pales [ ]
1.9M quilt [ ]
1.9M diffmap [ ]
1.8M crop [ ]
1.7M bin2mrc [ ]
1.7M rnaview [ ]
1.6M best [ ]
1.6M molscript [ ]
1.5M wasp [ ]
1.5M xds-viewer [ ]
1.5M madbend [ ]
1.4M curves [ ]
1.4M reduce [ ]
1.3M autodock [ ]
1.3M probe [ ]
1.3M crossflaghkl [ ]
1.3M randomize [ ]
1.2M untangle [ ]
1.2M raspnmr [ ]
1.2M cpmgfit [ ]
1.0M muscle [ ]
995.9K hkl2map [ ]
992.2K surfnet [ ]
990.8K pdb-care [ ]
911.1K rmerge [ ]
895.0K ligplot [ ]
891.9K naccess [ ]
821.0K hydronmr [ ]
738.2K dowser [ ]
648.1K rnaframework [ ]
641.8K bobscript [ ]
635.8K rmeasure [ ]
598.6K pdbfixer [ ]
582.8K molphy [ ]
539.8K qpack [ ]
485.3K profit [ ]
427.3K shapemapper [ ]
416.5K samviewer [ ]
367.0K probcons [ ]
363.7K matt [ ]
334.9K tkdiff [ ]
297.1K mes [ ]
212.2K amigos2 [ ]
185.2K protskin [ ]
157.5K stride [ ]
124.1K nuccyl [ ]
115.0K linux64.cshrc [ ]
114.0K linux64.shrc [ ]
113.8K sbgrid_linux64.cshrc [ ]
112.9K sbgrid_linux64.shrc [ ]
77.4K yup [ ]
76.0K surfrace [ ]
63.9K fastmodelfree [ ]
27.2K biogrids_linux64.cshrc [ ]
26.9K biogrids_linux64.shrc [ ]
24.3K sbgrid_capsule_linux64.shrc [ ]
24.3K sbgrid_capsule_linux64.cshrc [ ]
23.7K pipe2xeasy [ ]
18.2K sassie [ ]
109 pandas [ ]
108 numpy [ ]
107 pysam [ ]
106 pytz [ ]
95 rcrane [ ]
85 ccpnmr-chembuild [ ]
82 sparx [ ]
77 mdanalysis [ ]
74 biopython [ ]
72 ipython [ ]
70 scipy [ ]
61 ebseq [ ]
34 bioperl [ ] 26.7G schrodinger [+++++++++++++++++++++++++++++++++++++]
22.8G rosetta [+++++++++++++++++++++++++++++++ ]
14.7G pyrosetta [++++++++++++++++++++ ]
10.3G phenix [++++++++++++++ ]
9.6G pomona [+++++++++++++ ]
8.0G ccp4 [+++++++++++ ]
7.9G anaconda [++++++++++ ]
6.5G ambertools [+++++++++ ]
5.5G eman2 [+++++++ ]
4.9G spring [++++++ ]
4.2G texlive [+++++ ]
4.2G nmrpipe [+++++ ]
3.8G ilastik [+++++ ]
3.8G spider [+++++ ]
3.6G python [++++ ]
3.5G atsas [++++ ]
3.4G csrosetta [++++ ]
3.2G molprobity [++++ ]
3.1G peet [++++ ]
2.5G dials [+++ ]
2.5G ccp4mg [+++ ]
2.4G divcon [+++ ]
2.4G xmipp [+++ ]
2.1G pymol [++ ]
2.1G xplor [++ ]
2.0G chimera [++ ]
1.7G relax [++ ]
1.6G mageckvispr [++ ]
1.3G r [+ ]
1.2G coot [+ ]
1.1G geneious [+ ]
1.1G cns [+ ]
1.1G nmrfam-sparky [+ ]
1.1G whatcheck [+ ]
1.1G qt [+ ]
1.1G chimerax [+ ]
1.1G blastplus [+ ]
1.0G ccpnmr [+ ]
1.0G arp_warp [+ ]
1003.1M imp [+ ]
990.7M shiftx2 [+ ]
980.1M system [+ ]
906.3M iplt [+ ]
888.3M 2dx [+ ]
843.5M emboss [+ ]
809.9M nmrfx-processor [+ ]
805.5M rcsbtools [+ ]
797.0M em2em [+ ]
705.1M specview [ ]
694.7M focus [ ]
693.3M rstudio [ ]
643.7M raw [ ]
621.4M relion [ ]
618.9M bsoft [ ]
563.1M imod [ ]
483.4M solve [ ]
481.2M gwyddion [ ]
474.2M buster [ ]
472.7M caver [ ]
467.8M icmbrowser [ ]
465.2M mgltools [ ]
463.5M fiji [ ]
455.4M gorgon [ ]
452.4M balbes [ ]
443.6M hkl [ ]
441.8M powerfit [ ]
440.4M jalview [ ]
431.3M frealign [ ]
428.3M dynamo [ ]
410.1M blast [ ]
395.1M talosn [ ]
384.0M modeller [ ]
379.9M pymmlib [ ]
361.2M theseus [ ]
353.8M dssp [ ]
331.3M 3dna [ ]
324.9M locscale [ ]
323.8M mrc [ ]
305.2M ultrascan [ ]
296.9M simple [ ]
294.7M ultrascan3 [ ]
293.0M mgltools2 [ ]
289.8M autoproc [ ]
276.7M shelx-2013 [ ]
273.7M avogadro [ ]
227.4M lafire [ ]
220.9M albula [ ]
216.4M unio [ ]
205.7M vmd [ ]
200.6M caver_analyst [ ]
197.5M dock [ ]
196.0M cryoemtools [ ]
191.2M mono [ ]
187.9M spdbv [ ]
186.5M perl [ ]
185.1M imagej [ ]
183.9M plumed [ ]
182.9M dtrek_free [ ]
182.2M cp2k [ ]
175.0M mafft [ ]
171.7M rnastructure [ ]
170.4M auto3dem [ ]
164.8M apbs [ ]
164.6M spire [ ]
164.3M sharp [ ]
164.2M imagemagick [ ]
161.6M sratoolkit [ ]
158.4M tcltk [ ]
153.7M imosflm [ ]
151.4M igv [ ]
146.0M tigris [ ]
145.3M sparky [ ]
142.8M gromacs [ ]
141.7M bowtie2 [ ]
131.3M shelx [ ]
131.1M nmrview [ ]
129.6M priism [ ]
120.8M openmm [ ]
120.3M refmac [ ]
111.5M breseq [ ]
108.5M crystfel [ ]
107.2M clustal [ ]
102.0M ghostscript [ ]
100.9M gamma [ ]
98.9M mosflm [ ]
96.8M arcimboldo_lite [ ]
91.5M tcoffee [ ]
90.0M graphviz [ ]
87.6M infernal [ ]
83.1M xdsgui [ ]
80.8M openmpi [ ]
77.2M vmd-xplor [ ]
75.4M eman [ ]
74.3M wxpython [ ]
72.1M scatter [ ]
69.4M pytom [ ]
69.4M xds [ ]
63.3M raspnmr [ ]
63.1M gerard [ ]
62.4M cara [ ]
62.2M bbhp [ ]
61.1M sbgrid_installer [ ]
58.8M sculptor [ ]
56.6M xrayview [ ]
56.0M como [ ]
54.8M emip [ ]
53.4M namd [ ]
51.4M finchtv [ ]
50.6M pdb2pqr [ ]
49.8M openbabel [ ]
48.5M openmotif [ ]
46.8M staden [ ]
46.7M fasta [ ]
44.2M mmtsb [ ]
43.6M suprim [ ]
43.5M lib [ ]
42.9M ligplot [ ]
41.7M bcftools [ ]
37.8M phoelix [ ]
35.6M profphd [ ]
34.8M haddock [ ]
34.3M main [ ]
34.1M ctffind4 [ ]
33.4M sam [ ]
31.4M aria [ ]
31.3M scwrl4 [ ]
31.0M knuspr [ ]
30.3M o [ ]
29.8M pymol_open [ ]
29.7M mpich [ ]
29.2M stamp [ ]
29.2M ruby [ ]
29.1M pdb_redo [ ]
29.0M hole [ ]
28.9M pdb_extract [ ]
28.1M ringer [ ]
27.0M fpocket [ ]
26.4M simulaid [ ]
26.2M pft3dr [ ]
25.5M globus_connect_personal [ ]
24.9M samtools [ ]
24.7M xdsme [ ]
24.5M imodfit [ ]
24.4M phylip [ ]
24.0M raster3d [ ]
22.3M saxsview [ ]
21.9M molmol [ ]
21.0M eiger2cbf [ ]
20.8M grace [ ]
20.5M appion [ ]
20.4M ace2 [ ]
20.1M situs [ ]
20.0M adxv [ ]
19.6M direx [ ]
19.2M promals [ ]
18.9M resmap [ ]
18.8M gnuplot [ ]
18.6M eden [ ]
18.3M ligplus [ ]
18.3M miso [ ]
17.9M xds-viewer [ ]
17.4M cmview [ ]
17.1M mole [ ]
16.9M redcat [ ]
16.7M snb [ ]
16.4M r2r [ ]
16.3M remediator [ ]
15.5M smina [ ]
15.5M mrtailor [ ]
15.4M replace [ ]
13.4M assemble2 [ ]
13.3M netblast [ ]
13.1M rnamlview [ ]
12.8M povray [ ]
12.7M mcce [ ]
12.7M reduce [ ]
11.7M dyndom3d [ ]
11.4M nedit [ ]
11.2M tensor [ ]
10.9M espript [ ]
10.9M nessy [ ]
10.6M dino [ ]
10.4M electra [ ]
10.4M rasmol [ ]
10.0M mead [ ]
9.3M entangle [ ]
9.3M phases [ ]
8.4M ctf [ ]
8.2M surfnet [ ]
8.1M pgplot [ ]
8.0M procheck [ ]
7.9M elves [ ]
7.9M particle [ ]
7.3M zdock [ ]
6.5M bioptools [ ]
6.3M somore [ ]
5.9M nucplot [ ]
5.7M xv [ ]
5.5M amps [ ]
4.9M vina [ ]
4.8M modelfree [ ]
4.8M mmc [ ]
4.7M xdsapp [ ]
4.4M a2ps [ ]
4.4M signature [ ]
4.3M aqua [ ]
4.2M xdsi [ ]
3.9M weblogo [ ]
3.9M isthms [ ]
3.8M delphi [ ]
3.8M solvate [ ]
3.7M plotutils [ ]
3.7M bobscript [ ]
3.6M autodock [ ]
3.6M aline [ ]
3.5M dssr [ ]
3.4M ssaha2 [ ]
3.3M curvesplus [ ]
3.2M pdb-care [ ]
3.2M fftw [ ]
3.0M pales [ ]
3.0M embfactor [ ]
2.8M quilt [ ]
2.7M qushape [ ]
2.4M profit [ ]
2.3M rnaview [ ]
2.3M diffmap [ ]
2.3M dyndom [ ]
2.2M mammoth-mult [ ]
2.2M plotmtv [ ]
2.2M bfactor [ ]
2.1M concoord [ ]
1.9M xdsstat [ ]
1.9M scc [ ]
1.8M x3d [ ]
1.8M hbplus [ ]
1.7M epmr [ ]
1.7M molphy [ ]
1.6M curves [ ]
1.6M probe [ ]
1.5M primer3 [ ]
1.4M rmerge [ ]
1.4M xdscc12 [ ]
1.2M cpmgfit [ ]
1.1M rmeasure [ ]
1.1M molscript [ ]
1.0M timescapes [ ]
1.0M muscle [ ]
819.8K best [ ]
812.1K hkl2map [ ]
683.6K wasp [ ]
622.1K dowser [ ]
597.1K pdbfixer [ ]
527.6K superfold [ ]
522.6K qpack [ ]
483.4K shapemapper [ ]
463.4K rnaframework [ ]
433.9K neggia [ ]
420.8K surfv [ ]
416.6K samviewer [ ]
396.6K probcons [ ]
380.6K matt [ ]
334.9K tkdiff [ ]
315.3K crop [ ]
298.8K mes [ ]
212.1K amigos2 [ ]
208.5K naccess [ ]
185.1K protskin [ ]
149.8K yup [ ]
143.4K stride [ ]
122.5K nuccyl [ ]
87.5K surfrace [ ]
63.9K fastmodelfree [ ]
30.6K pipe2xeasy [ ]
102 cython [ ]
100 pandas [ ]
99 numpy [ ]
81 ccpnmr-chembuild [ ]
74 sparx [ ]
73 mdanalysis [ ]
73 rcrane [ ]
68 biopython [ ]
68 ipython [ ]
67 pysam [ ]
67 scipy [ ]
65 bioperl [ ]
65 pytz [ ]
57 ebseq [ ] 5.1G balbes [++++++++++++++++++++++++++++++++++++++++++++++++++++++]
1.2G pymol [++++++++++++ ]
714.7M gerard [+++++++ ]
569.8M spider [+++++ ]
449.0M ligplus [++++ ]
418.7M emip [++++ ]
330.8M refmac [+++ ]
260.9M o [++ ]
216.9M caver [++ ]
192.7M whatcheck [+ ]
78.0M reduce [ ]
25.1M imagej [ ]
23.1M fiji [ ]
8.4M system [ ]
6.1M ghostscript [ ]
1.8M blast [ ]
1.6M grids [ ]
368.6K simulaid [ ]
328.2K sbgrid [ ]
258.5K adxv [ ]
198.9K emboss [ ]
197.4K capsules [ ]
132.6K xds [ ]
128.9K sam [ ]
105.4K bin [ ]
49.0K cns [ ]
19.0K LICENSE [ ]
2.3K PRIVACY [ ]
1.6K ANALYTICS [ ]
50 pyrosetta [ ]
18 sitename [ ]
13 hostname [ ]
8 rosetta [ ]