Supported Applications
MISO
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Description
(Mixture-of-Isoforms) for isoform quantitation using RNA-Seq is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples.
MISO is installed as a standalone program and as a module within python.
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Usage
To list all executables provided by MISO, run:$ sbgrid-list miso -
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install misoAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
Y. Katz, E. T. Wang, E. M. Airoldi, and C. B. Burge. 2010. Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nature Methods. 7: 1009-1015.
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*Full citation information available through
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Keywords
Alternative Splicing, High-throughput sequencing, Python Module, RNA-Seq Analysis
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Default Versions
Linux 64: 0.5.4 (1.1 GB)
OS X INTEL: 0.5.4 (785.1 MB) -
Other Versions
Linux 64:
0.5.2 (18.3 MB) -
OS X INTEL:
0.5.2 (18.3 MB)
Developers
Yarden Katz