e6171e408215dc131a3e5e5191d4592ff9d435f8
sbgrid-consortium-discussion-forum/new-workstation-setup.md
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| 1 | -I have CentOS 7 installed working to get SBGrid working on it. |
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| 2 | - |
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| 3 | - |
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| 4 | - |
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| 5 | -I have followed steps on <https://sbgrid.org/wiki/software/workstation_setup> |
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| 6 | - |
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| 7 | - |
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| 8 | - |
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| 9 | -Everything went smoothly except ncurses.i686 did not install. |
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| 10 | - |
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| 11 | - |
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| 12 | - |
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| 13 | - |
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| 14 | - |
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| 15 | -> [user@biocvh-00754l programs]$ ls |
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| 16 | - |
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| 17 | -> |
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| 18 | - |
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| 19 | -> i386-linux l m sbgrid.shrc x |
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| 20 | - |
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| 21 | -> |
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| 22 | - |
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| 23 | -> i386-mac labcshrc sbgrid.cshrc share x86_64-linux |
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| 24 | - |
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| 25 | -> |
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| 26 | - |
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| 27 | -> [user@biocvh-00754l programs]$ ./sbgrid.shrc |
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| 28 | - |
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| 29 | -> |
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| 30 | - |
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| 31 | -> Software Support by SBGrid (www.sbgrid.org) |
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| 32 | - |
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| 33 | -> |
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| 34 | - |
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| 35 | -> |
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| 36 | -******************************************************************************** |
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| 37 | - |
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| 38 | -> |
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| 39 | - |
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| 40 | -> Your use of the applications contained in the /programs directory |
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| 41 | -constitutes |
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| 42 | - |
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| 43 | -> |
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| 44 | - |
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| 45 | -> acceptance of the terms of the SBGrid License Agreement included in the |
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| 46 | -file |
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| 47 | - |
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| 48 | -> |
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| 49 | - |
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| 50 | -> /programs/share/LICENSE. The applications distributed by SBGrid are |
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| 51 | -licensed |
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| 52 | - |
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| 53 | -> |
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| 54 | - |
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| 55 | -> exclusively to member laboratories of the SBGrid Consortium. |
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| 56 | - |
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| 57 | -> |
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| 58 | - |
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| 59 | -> /programs/x86_64-linux/dials/dev-496/dials-dev-496/build/setpaths.sh: line |
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| 60 | -22: libtbx.find_in_repositories: command not found |
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| 61 | - |
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| 62 | -> |
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| 63 | - |
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| 64 | -> /programs/x86_64-linux/dials/dev-496/dials-dev-496/build/setpaths.sh: line |
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| 65 | -22: source: filename argument required |
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| 66 | - |
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| 67 | -> |
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| 68 | - |
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| 69 | -> source: usage: source filename [arguments] |
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| 70 | - |
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| 71 | -> |
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| 72 | - |
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| 73 | -> /programs/x86_64-linux/dials/dev-496/dials-dev-496/build/setpaths.sh: line |
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| 74 | -35: libtbx.path_utility: command not found |
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| 75 | - |
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| 76 | -> |
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| 77 | - |
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| 78 | -> /programs/x86_64-linux/phenix/1.10-2155/phenix-1.10-2155/build/setpaths.sh: |
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| 79 | -line 9: dirname: No such file or directory |
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| 80 | - |
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| 81 | -> |
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| 82 | - |
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| 83 | -> /programs/x86_64-linux/phenix/1.10-2155/phenix-1.10-2155/build/setpaths.sh: |
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| 84 | -line 30: libtbx.path_utility: command not found |
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| 85 | - |
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| 86 | -> |
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| 87 | - |
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| 88 | -> /programs/share/bin/sbgrid-update-check: line 15: basename: command not |
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| 89 | -found |
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| 90 | - |
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| 91 | -> |
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| 92 | - |
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| 93 | -> /programs/share/bin/sbgrid-update-check: line 15: basename: command not |
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| 94 | -found |
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| 95 | - |
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| 96 | -> |
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| 97 | - |
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| 98 | -> /programs/share/bin/sbgrid-update-check: line 77: date: command not found |
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| 99 | - |
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| 100 | -> |
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| 101 | - |
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| 102 | -> |
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| 103 | -******************************************************************************** |
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| 104 | - |
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| 105 | -> |
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| 106 | - |
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| 107 | -> SBGrid was developed with support from its members, Harvard Medical School, |
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| 108 | -> |
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| 109 | - |
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| 110 | -> HHMI, and NSF. If use of SBGrid compiled software was an important element |
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| 111 | -> |
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| 112 | - |
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| 113 | -> in your publication, please include the following reference in your work: |
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| 114 | -> |
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| 115 | - |
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| 116 | -> |
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| 117 | -> |
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| 118 | - |
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| 119 | -> Software used in the project was installed and configured by SBGrid. |
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| 120 | -> |
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| 121 | - |
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| 122 | -> cite: eLife 2013;2:e01456, Collaboration gets the most out of software. |
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| 123 | -> |
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| 124 | - |
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| 125 | -> |
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| 126 | -******************************************************************************** |
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| 127 | - |
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| 128 | -> |
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| 129 | - |
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| 130 | -> SBGrid installation last updated: 2016-02-03 . |
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| 131 | -> |
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| 132 | - |
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| 133 | -> Please submit bug reports and help requests to: |
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| 134 | -> |
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| 135 | - |
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| 136 | -> <https://sbgrid.org/help> or [bugs@sbgrid.org](mailto:bugs@sbgrid.org) |
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| 137 | -> |
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| 138 | - |
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| 139 | -> |
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| 140 | -******************************************************************************** |
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| 141 | - |
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| 142 | -> |
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| 143 | - |
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| 144 | -> ./sbgrid.shrc: line 284: date: command not found |
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| 145 | - |
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| 146 | -> |
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| 147 | - |
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| 148 | -> [user@biocvh-00754l programs]$ coot |
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| 149 | - |
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| 150 | -> |
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| 151 | - |
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| 152 | -> bash: coot: command not found... |
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| 153 | - |
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| 154 | -> |
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| 155 | - |
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| 156 | -> [user@biocvh-00754l programs]$ date |
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| 157 | - |
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| 158 | -> |
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| 159 | - |
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| 160 | -> Fri Feb 12 11:46:19 CST 2016 |
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| 161 | - |
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| 162 | -> |
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| 163 | - |
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| 164 | -> [user@biocvh-00754l programs]$ |
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| 165 | - |
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| 166 | -I can start the process but it seems to not see other commands like data that |
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| 167 | -are installed and working on the system. |
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| 168 | - |