b458f8c82ab7c663d807c9c4bafad87d9315a560
HMS2-Hogle-Liao-Sliz-Labs.md
... | ... | @@ -140,6 +140,14 @@ Sliz lab also has access to crystallization-room computers (Gryphon controller, |
140 | 140 | * Geneious: Geneious is preinstalled with SBGrid software collection and Sliz lab has access to a shared database. |
141 | 141 | * Please email Piotr for the database login credentials. |
142 | 142 | * Please use ReadCube for managing your references and we will purchase a Pro version for your use (Pro supports syncing files between multiple computers). |
143 | + |
|
144 | +## Custom Software |
|
145 | + |
|
146 | +#### HKL2000 |
|
147 | +Licenses for HKL2000 are limited to one specific system per lab. |
|
148 | +##### Blacklow LAB |
|
149 | +Blacklow Lab members can use the following system to run HKL2000: |
|
150 | +* scbl1 |
|
143 | 151 | |
144 | 152 | ### Sliz Support: |
145 | 153 |
bch2-wu-springer-hur.md
... | ... | @@ -23,7 +23,17 @@ The Linux computers share authentication and data directories and can only be ac |
23 | 23 | The systems named venus, mercury, and mars have GPUs installed and are used for data processing. These systems can be accessed remotely. |
24 | 24 | Please note that your home directories are only visible to your labmates and PI by default. Permissions vary depending on the nature of the directory or files in question. PIs can request modifications to file permissions to suit the lab's needs. |
25 | 25 | |
26 | -# Wu Lab Software |
|
26 | +## Custom Software |
|
27 | + |
|
28 | +#### HKL2000 |
|
29 | +Licenses for HKL2000 are limited to one specific system per lab. |
|
30 | + |
|
31 | +##### Springer Lab |
|
32 | +Springer Lab members can use the following system to run HKL2000: |
|
33 | +* tsl2 |
|
34 | + |
|
35 | +#### Cryosparc |
|
36 | +##### Wu Lab |
|
27 | 37 | Cryosparc is installed on Venus. Cryosparc is installed and running on Venus. It is accessible via a web interface, please email [help@sbgrid.org](mailto:help@sbgrid.org) to ask how to access it. |
28 | 38 | |
29 | 39 |
dfci-eck-fischer-wang-dhepaganon-arthanari-sun.md
... | ... | @@ -100,10 +100,12 @@ There are two types of data generated by the imager: |
100 | 100 | The data is accessible on the RockImager PCs and also through the RockMaker software. Formulatrix provides technical support for the instrument and has |
101 | 101 | remote access for troubleshooting. SBGrid maintains the server configuration. |
102 | 102 | |
103 | -# Site Specific Software |
|
104 | - |
|
103 | +## Custom Software |
|
105 | 104 | ### HKL2000 |
106 | -Licenses for HKL2000 are limited to one specific system per lab. At DFCI you can use the system named mjel12 to run HKL2000. |
|
105 | +Licenses for HKL2000 are limited to one specific system per lab. At DFCI you can use the following systems: |
|
106 | + |
|
107 | +* mjel6 |
|
108 | +* mjel12 |
|
107 | 109 | |
108 | 110 | # Networking and General IT Support |
109 | 111 | There are HMS network switches on the 3rd and 4th floors that connect the labs to SBGrid infrastructure. A new port must be |
hms3-blacklow-brown-kruse-rapoport.md
... | ... | @@ -135,5 +135,19 @@ To access the EM Facility in the basement of SGM, please contact [Zongi Li](http |
135 | 135 | If you need a data directory created on the EM systems, please email SBGrid and cc Zongi Li. Please remember that data |
136 | 136 | directories on the EM systems are not backed up. It is essential that you store your data elsewhere. |
137 | 137 | |
138 | +## Custom Software |
|
138 | 139 | |
140 | +#### HKL2000 |
|
141 | +Licenses for HKL2000 are limited to one specific system per lab. |
|
139 | 142 | |
143 | +##### Blacklow Lab |
|
144 | +Blacklow Lab members can use the following system to run HKL2000: |
|
145 | +* scbl1 |
|
146 | + |
|
147 | +##### Kruse Lab |
|
148 | +Kruse Lab members can use the following system to run HKL2000: |
|
149 | +* akl1 |
|
150 | + |
|
151 | +##### Rapoport Lab |
|
152 | +Rapoport Lab members can use the following system to run HKL2000: |
|
153 | +* trl2 |
hu1-gaudet-dsouza.md
... | ... | @@ -30,15 +30,10 @@ docking computations and data processing. To access cerberus, ssh to **galactica |
30 | 30 | Please note that your home directories are only visible to your labmates and PI by default. Permissions vary depending on the |
31 | 31 | nature of the directory or files in question. PIs can request modifications to file permissions to suit the lab's needs. |
32 | 32 | |
33 | -#### HKL2000 |
|
34 | -The workstation Pioneer contains a license for running **HKL2000**. |
|
35 | - |
|
36 | - |
|
37 | 33 | # Printing |
38 | 34 | There are 2 printers available, one located in the hallway near room 305 (carmen), the other in the wet lab (vger). |
39 | 35 | For printer problems, please contact [help@sbgrid.org](mailto:help@sbgrid.org). |
40 | 36 | |
41 | - |
|
42 | 37 | # Data Backups |
43 | 38 | Snapshots of the Linux filesystems are taken every hour and kept for 24 hours on the file server. Additionally, 7 daily snapshots are kept, 8 weeks, |
44 | 39 | and up to 12 months. Data is also replicated to a secondary server. If you need a file restored, please contact [help@sbgrid.org](mailto:help@sbgrid.org). |
... | ... | @@ -58,6 +53,20 @@ Do the following to copy the files to your home directory: |
58 | 53 | |
59 | 54 | Then start nmrviewj. |
60 | 55 | |
56 | +## Custom Software |
|
57 | + |
|
58 | +#### HKL2000 |
|
59 | +Licenses for HKL2000 are limited to one specific system per lab. |
|
60 | + |
|
61 | +##### D'Souza LAB |
|
62 | +D'Souza Lab members can use the following system to run HKL2000: |
|
63 | +* rufus |
|
64 | + |
|
65 | +##### Gaudet LAB |
|
66 | +Gaudet Lab members can use the following system to run HKL2000: |
|
67 | + |
|
68 | +* pioneer |
|
69 | + |
|
61 | 70 | # Networking and General IT Support |
62 | 71 | To report Harvard University network problems or for general computing support, contact the Harvard University help desk. |
63 | 72 | If you need to activate a port in the lab for a new SBGrid-supported system, please contact Harvard research computing and cc SBGrid. |