aeb6705019f6359849611e4951e998ba36d1f0f6
HMS2-Hogle-Liao-Sliz-Labs.md
| ... | ... | @@ -79,7 +79,7 @@ backed up. If you accidentally delete important files, please let us know as soo |
| 79 | 79 | the file for you. |
| 80 | 80 | |
| 81 | 81 | Linux systems have network home directories and access to the SBGrid programs tree (via /programs). |
| 82 | -See this [link](faqs-using-sbgrid-programs) for information on how to access the software. |
|
| 82 | +See this [link](faq-using-sbgrid-programs) for information on how to access the software. |
|
| 83 | 83 | |
| 84 | 84 | ### Mac |
| 85 | 85 | Mac computers rely on either network accounts or local accounts. We will soon transition all Mac computers to local accounts because of problems many people have encountered Macs & network accounts. |
faq-coot-stereo-swap.md
| ... | ... | @@ -0,0 +1,9 @@ |
| 1 | +# Coot Swap Problems |
|
| 2 | + |
|
| 3 | +If the graphics appear swapped or inverted in coot, typing |
|
| 4 | +`switch_stereo_sides()` (python scripting) or `(switch-stereo-sides)` (scheme |
|
| 5 | +scripting) may resolve the problem. |
|
| 6 | + |
|
| 7 | +If this persists, this can also be set |
|
| 8 | +permanently in your `~/.coot` file. |
|
| 9 | + |
faq-dial-boxes-on-linux.md
| ... | ... | @@ -0,0 +1,22 @@ |
| 1 | +# SGI Dial Boxes |
|
| 2 | + |
|
| 3 | +It's possible, at least in some cases, to use SGI dial boxes on linux with `O`. [[https://upload.wikimedia.org/wikipedia/commons/thumb/c/cd/SGI_dialbox_DLS80-1022_front.jpg/220px-SGI_dialbox_DLS80-1022_front.jpg| SGI Dial Box Image]] |
|
| 4 | + |
|
| 5 | +## What you need |
|
| 6 | + |
|
| 7 | + 1. Dial Box |
|
| 8 | + 2. Power supply for the dial box |
|
| 9 | + 3. Serial to USB adaptor |
|
| 10 | + 4. admin access to the system, and awareness that messing around in `/dev` can cause problems. |
|
| 11 | + |
|
| 12 | +## What to do |
|
| 13 | + |
|
| 14 | + 1. add users to appropriate group for `/dev/tty*` files (`dialout`) |
|
| 15 | + 2. connect dial box and power supply |
|
| 16 | + 3. remove `/dev/ttyS0` |
|
| 17 | + 4. create symlink `ln -s /dev/ttyUSB0 /dev/ttyS0` |
|
| 18 | + 5. Start `O` , check if dials work. |
|
| 19 | + |
|
| 20 | +## References |
|
| 21 | +<https://en.wikipedia.org/wiki/Dial_box> |
|
| 22 | + |
faqs.md
| ... | ... | @@ -12,6 +12,7 @@ Frequently Answered Questions |
| 12 | 12 | ## Software & Linux/Mac/UNIX |
| 13 | 13 | |
| 14 | 14 | * [Access Remote Filesystems using SSHFS](faq-sshfs) |
| 15 | +* [Coot Stereo Problems](coot-stereo-swap) |
|
| 15 | 16 | * [Firefox Problems on Network Account](faq-troubleshooting-firefox-on-a-network-account) |
| 16 | 17 | * [How to Forward Email](faq-forwarding-mail-to-crystal) |
| 17 | 18 | * [Linux Remote Access](faq-remote-access-to-linux-computers) |
sbgrid-consortium-discussion-forum/coot-stereo-swap.md
| ... | ... | @@ -1,5 +0,0 @@ |
| 1 | -If the graphics appear swapped or inverted in coot, typing |
|
| 2 | -`switch_stereo_sides()` (python scripting) or `(switch-stereo-sides)` (scheme |
|
| 3 | -scripting) may resolve the problem. If this persists, this can also be set |
|
| 4 | -permanently in your `~/.coot` file. |
|
| 5 | - |
sbgrid-consortium-discussion-forum/dial-boxes-on-linux.md
| ... | ... | @@ -1,18 +0,0 @@ |
| 1 | -It's possible, at least in some cases, to use SGI dial boxes on linux with |
|
| 2 | -`O`. |
|
| 3 | - |
|
| 4 | -## What you need |
|
| 5 | - |
|
| 6 | - 1. Dial Box |
|
| 7 | - 2. Power supply for the dial box |
|
| 8 | - 3. Serial to USB adaptor |
|
| 9 | - 4. admin access to the system, and awareness that messing around in `/dev` can cause problems. |
|
| 10 | - |
|
| 11 | -## What to do |
|
| 12 | - |
|
| 13 | - 1. add users to appropriate group for `/dev/tty*` files (`dialout`) |
|
| 14 | - 2. connect dial box and power supply |
|
| 15 | - 3. remove `/dev/ttyS0` |
|
| 16 | - 4. create symlink `ln -s /dev/ttyUSB0 /dev/ttyS0` |
|
| 17 | - 5. Start `O` , check if dials work. |
|
| 18 | - |