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Supported Applications

MemBrain-Seg

  • Description

    Membrane segmentation in 3D for cryo-electron tomography (cryo-ET).

  • Usage

    To list all executables provided by MemBrain-Seg, run: $ sbgrid-list membrain-seg Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install membrain-seg Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    F. Isensee, P. F. Jaeger, S. A. A. Kohl, J. Petersen, and K. H. Maier-Hein. 2021. nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods. 18(2): 203-211.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  d76e97e (5.3 GB)

  • Other Versions

      Linux 64:

      e28baac (5.3 GB)

  • Developers

    Lorenz Lamm, Alister Burt, Benjamin Barad, Kevin Yamauchi, Ricardo Righetto

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