Supported Applications
LipIDens
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Description
LipIDens is a pipeline for simulation assisted interpretation of lipid or lipid-like densities in e.g. cryogenic electron microscopy (cryo-EM) structures of membrane proteins.
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Usage
To list all executables provided by LipIDens, run:$ sbgrid-list lipidens
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Usage Notes
LipIDens provides three callable programs:
python.lipidens
lipidens_master_run.py
master_run.py
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install lipidens
Available operating systems: Linux 64 -
Citation Note
Please cite the following if elements of the LipIDens protocol are used:
Ansell, T.B., Song, W., Coupland, C.E., Carrique, L., Corey, R.A., Duncan, A.L., Cassidy, C.K., Geurts, M.M.G., Rasmussen, T., Ward, A.B., Siebold, C., Stansfeld, P., Sansom, M.S.P. (2022). LipIDens: Simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins. bioRxiv, doi: 10.1101/2022.06.30.498233
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Keywords
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Default Versions
Linux 64:  1.0 (1.6 GB)