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Supported Applications

IGV

  • Description

    (Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.

  • Usage

    To list all executables provided by IGV, run: $ sbgrid-list igv Copy to clipboard

  • Usage Notes

    https://github.com/broadinstitute/IGV/issues

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install igv Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. T. Robinson, H. Thorvaldsdóttir, W. Winckler, M. Guttman, E. S. Lander, G. Getz, and J. P. Mesirov. 2011. Integrative genomics viewer. Nature Biotechnology. 29: 24-26.


    • *Full citation information available through

  • Citation Note

    James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov. igv.js: an embeddable JavaScript 

    implementation of the Integrative Genomics Viewer (IGV), Bioinformatics, 39(1) (2023), btac830

  • Keywords

    ChIP-Sequencing, DNA-Sequencing, Genome Annotation, Genome Visualization, Genomics, Visualization

  • Default Versions

    Linux 64:  2.17.4 (168.7 MB)
    OS X INTEL:  2.17.4 (142.1 MB)

  • Other Versions

      Linux 64:

      2.11.9 (174.3 MB) , 2.16.0 (153.3 MB) , 2.16.2 (153.3 MB) , 2.17.0 (168.7 MB)

    • OS X INTEL:

      2.11.9 (177.9 MB) , 2.16.0 (156.9 MB) , 2.16.2 (156.9 MB) , 2.17.0 (142.2 MB)

  • Developers

    Helga Thorvaldsdottir, Jacob Silterra, Jill Mesirov, Jim Robinson

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